Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.2e-226 789.6 402 100.0
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 8.9e-206 720.3 398 91.7
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 1.9e-176 622.9 411 80.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 4.4e-152 542.0 406 74.1
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 1.7e-151 540.0 405 74.3
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.5e-148 528.1 296 90.9
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 8.0e-146 521.2 409 68.9
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 3.8e-140 502.3 409 66.3
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.0e-138 494.6 407 65.6
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.0e-137 494.2 408 65.2
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 6.8e-137 491.5 408 66.7
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.0e-136 490.0 404 66.6
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.6e-136 489.6 407 65.1
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 7.5e-136 488.0 403 66.5
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.5e-136 488.0 407 65.4
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.7e-135 485.7 407 64.9
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 6.3e-135 485.0 403 66.3
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.7e-132 476.9 411 65.5
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.9e-132 476.1 376 68.4
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.0e-129 467.6 414 65.5
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 8.8e-129 464.5 414 61.8
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 1.2e-128 464.2 404 64.6
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 9.8e-128 461.1 410 63.4
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.3e-127 460.7 407 64.4
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 4.8e-127 458.8 411 62.5
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.0e-124 451.1 355 67.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 3.6e-122 442.6 411 62.8
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.2e-120 437.6 412 61.9
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.5e-120 437.2 399 60.4
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.2e-117 427.6 400 60.0
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 7.8e-117 424.9 401 58.1
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.5e-115 419.9 401 58.4
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.3e-115 419.1 412 57.0
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 7.3e-115 418.3 447 56.8
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 1.6e-114 417.2 408 57.4
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 4.7e-114 415.6 402 58.7
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.0e-113 414.5 413 58.4
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 1.8e-113 413.7 403 59.1
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 3.1e-113 412.9 413 59.1
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 2.0e-112 410.2 399 58.6
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.6e-112 409.8 414 56.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.3e-111 407.5 404 56.9
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 8.3e-111 404.8 402 59.0
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.1e-110 404.4 350 62.3
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.3e-107 392.5 411 56.4
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.6e-106 390.6 421 53.7
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.0e-104 383.6 411 56.7
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.1e-102 377.9 375 57.3
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.7e-101 373.2 412 56.6
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 2.7e-101 373.2 403 54.8
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 3.5e-101 372.9 303 67.3
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.3e-100 370.9 394 57.9
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.7e-100 370.5 403 54.6
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 5.1e-100 369.0 405 54.1
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.5e-99 367.5 403 53.8
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.8e-98 363.2 403 52.9
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 8.1e-98 361.7 419 54.2
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 3.1e-97 359.8 477 47.6
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 4.0e-97 359.4 413 52.1
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 2.0e-96 357.1 301 65.4
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 3.4e-96 356.3 284 67.3
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 7.6e-96 355.1 400 52.8
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.9e-95 353.2 403 51.9
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.9e-95 352.4 403 51.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 4.1e-94 349.4 419 53.7
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 6.2e-90 335.5 381 52.2
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 2.6e-88 330.1 430 48.4
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.3e-87 327.8 402 49.5
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.9e-86 323.9 437 49.7
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.9e-86 323.9 298 59.7
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 3.9e-84 316.2 402 49.3
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.5e-83 314.3 402 48.5
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.5e-80 304.3 392 48.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 2.9e-79 300.1 339 52.2
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.8e-79 299.7 307 55.7
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 8.4e-79 298.5 290 58.6
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.9e-78 297.4 341 52.5
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 9.3e-78 295.0 260 62.3
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.0e-76 291.6 402 49.3
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.5e-75 287.0 340 52.9
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 3.3e-75 286.6 363 49.9
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.8e-74 283.5 343 50.1
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 1.1e-73 281.6 403 48.1
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.4e-73 280.4 402 47.3
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 9.0e-73 278.5 408 45.3
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.4e-72 276.6 307 53.7
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 3.4e-72 276.6 407 43.5
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 3.8e-71 273.1 296 53.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.1e-70 271.6 397 46.1
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 9.3e-70 268.5 389 45.5
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.2e-69 268.1 327 50.8
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 9.0e-65 251.9 357 47.1
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.4e-64 250.0 331 48.0
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 8.4e-63 245.4 344 47.4
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 3.5e-61 240.0 357 44.8
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 6.7e-60 235.7 349 46.1
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 4.8e-58 229.6 408 40.0
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.2e-56 224.9 413 40.4
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 5.0e-55 219.5 261 53.6
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 6.5e-55 219.2 409 39.6
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.5e-55 219.2 407 40.5
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 6.5e-55 219.2 411 39.4
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 6.5e-55 219.2 415 42.2
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 2.5e-54 217.2 371 41.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.5e-54 217.2 415 39.3
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.5e-54 217.2 414 38.9
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.6e-53 214.5 409 39.6
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.7e-53 213.8 322 44.4
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 4.6e-53 213.0 409 39.4
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.0e-52 211.8 411 38.7
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 5.7e-51 206.1 348 43.4
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.0e-48 197.6 275 46.5
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 5.0e-47 193.0 409 37.7
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 3.6e-45 186.8 411 38.0
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 4.6e-45 186.4 409 36.4
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.4e-44 184.9 406 37.2
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.1e-43 181.8 273 45.1
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.7e-42 177.9 413 35.8
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.8e-41 174.5 404 35.1
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 9.1e-41 172.2 196 53.1
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 3.8e-31 140.2 359 36.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.0e-28 132.1 317 34.7
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 2.8e-26 124.0 205 43.4
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.8e-26 124.0 271 35.4
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 3.1e-25 120.6 121 52.9
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 5.0e-23 113.2 260 35.8
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.2e-22 110.5 129 47.3
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 7.2e-22 109.4 243 35.4
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 3.6e-21 107.1 169 40.2
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.8e-20 104.8 320 32.2
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 5.2e-20 103.2 185 38.4
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.5e-19 101.7 170 39.4
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.5e-19 101.7 139 46.8
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.6e-19 100.9 151 44.4
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.4e-17 95.1 99 51.5
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.4e-17 95.1 343 30.0
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 2.0e-11 74.7 75 50.7
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 5.4e-09 66.6 140 35.0
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 5.4e-09 66.6 140 35.0
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 5.9e-08 63.2 46 63.0
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 2.5e-06 57.8 67 47.8


User provided reference genes

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