Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.8e-111 406.0 213 100.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.3e-103 377.9 211 92.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.0e-99 364.4 225 87.1
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.0e-85 320.5 209 78.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.9e-85 318.9 209 78.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.5e-84 314.7 211 77.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 9.3e-84 313.9 204 79.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.5e-83 312.0 210 79.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 7.9e-83 310.8 211 76.8
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.0e-82 310.5 213 78.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.0e-82 310.5 211 77.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.3e-82 309.3 207 78.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.0e-82 308.9 211 77.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 5.1e-82 308.1 210 74.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.5e-81 305.8 209 80.4
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.3e-80 303.5 212 74.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.3e-80 303.5 207 76.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.6e-80 303.1 209 76.1
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 3.7e-80 302.0 212 76.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.4e-79 300.1 207 74.4
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.4e-79 300.1 210 77.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.3e-79 298.1 206 76.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 6.9e-79 297.7 201 78.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.9e-79 297.7 205 76.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.0e-79 297.4 201 77.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 9.0e-79 297.4 210 73.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.0e-78 296.2 207 75.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.6e-78 295.8 206 75.7
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.4e-78 295.4 207 75.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.4e-78 295.4 206 75.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 3.4e-78 295.4 211 74.9
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.8e-78 294.7 207 76.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.8e-78 294.7 201 79.1
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.0e-77 293.9 212 74.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.3e-77 293.5 211 74.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.2e-77 292.7 211 73.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.2e-77 292.7 206 74.8
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.9e-77 292.4 211 74.9
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.9e-77 292.4 211 74.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.9e-77 292.4 202 77.2
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.0e-77 291.6 199 76.4
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 6.5e-77 291.2 212 73.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.5e-77 291.2 194 78.9
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.4e-77 290.8 211 73.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 8.4e-77 290.8 211 70.1
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.1e-76 290.4 211 73.9
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 214 72.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.4e-76 290.0 206 73.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.4e-76 290.0 206 74.3
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.9e-76 289.7 181 79.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.5e-76 289.3 194 78.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.2e-76 288.9 194 78.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.5e-76 288.1 213 75.1
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 9.3e-76 287.3 207 74.9
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.2e-75 287.0 177 81.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.1e-75 286.2 204 77.0
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.7e-75 285.8 194 76.8
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.7e-75 285.8 182 81.3
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.7e-75 285.8 200 75.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.5e-75 285.4 227 70.9
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 213 74.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.1e-75 284.6 203 75.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-74 282.7 210 71.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.3e-74 282.7 210 70.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.9e-74 282.0 202 72.8
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.7e-74 281.2 211 69.2
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.7e-74 281.2 206 71.8
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-73 280.4 210 71.9
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.1e-73 280.4 198 73.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-73 280.0 210 70.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.5e-73 279.3 210 71.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.5e-73 279.3 211 70.1
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.3e-73 278.9 194 75.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.3e-73 278.5 210 71.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 9.7e-73 277.3 206 69.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.6e-72 276.6 200 72.5
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.6e-72 276.6 189 75.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.8e-72 275.8 194 74.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.8e-72 275.8 210 71.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.8e-72 275.0 211 71.1
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.8e-72 275.0 196 68.4
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.1e-71 273.9 209 67.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.1e-71 273.9 216 69.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-71 273.9 210 69.5
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.4e-71 273.5 205 70.7
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.4e-71 272.7 213 69.5
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-71 272.7 210 70.5
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.4e-71 272.7 216 69.4
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 9.0e-71 270.8 207 66.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-70 270.0 207 67.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.5e-70 270.0 295 54.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.6e-70 269.2 202 69.8
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 7.7e-70 267.7 207 68.6
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-69 267.3 208 69.2
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-69 266.5 201 72.1
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 209 68.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 207 66.7
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 6.5e-69 264.6 202 69.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.9e-68 263.1 159 82.4
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.2e-68 262.3 195 70.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.2e-68 261.9 160 81.2
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 7.2e-68 261.2 205 68.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 7.2e-68 261.2 204 69.6
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.7e-67 259.2 174 74.1
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.6e-67 258.8 192 71.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 4.6e-67 258.5 213 69.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.1e-65 253.8 199 66.8
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.3e-65 251.9 175 70.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.4e-65 251.1 198 67.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.3e-64 250.4 177 74.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 3.7e-64 248.8 205 68.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 6.3e-64 248.1 204 65.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.0e-62 243.0 202 65.3
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.6e-62 242.7 203 66.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.9e-61 239.2 205 62.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.8e-61 238.8 162 77.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.8e-61 238.8 169 74.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.5e-61 238.0 197 65.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.1e-60 237.3 170 74.7
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.4e-60 234.2 208 63.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 4.4e-57 225.3 171 69.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.4e-57 224.6 200 62.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.1e-52 210.7 127 82.7
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.9e-52 209.9 189 57.7
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.1e-51 204.9 204 60.8
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.0e-50 202.2 121 82.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-49 200.7 127 79.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.1e-47 194.1 170 58.2
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-47 192.6 169 64.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 7.0e-47 191.4 196 54.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.9e-46 188.3 205 56.1
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.5e-44 181.8 150 59.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 4.7e-43 178.7 200 53.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.2e-41 174.1 120 72.5
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.3e-40 170.6 197 55.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.4e-39 167.2 170 52.4
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.8e-39 166.8 103 80.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.4e-39 166.4 106 78.3
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.5e-37 157.9 87 87.4
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 7.2e-36 154.8 175 48.6
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-35 153.7 149 51.7
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.8e-33 144.4 191 46.6
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.6e-28 128.6 106 65.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.6e-19 99.4 211 37.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.7e-19 99.0 73 64.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.8e-18 97.1 73 63.0
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.3e-18 96.7 169 38.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.2e-17 94.4 98 57.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 3.7e-16 89.4 55 74.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.4e-16 88.6 59 71.2
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.3e-13 80.9 94 46.8
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.1e-12 77.8 185 32.4
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.5e-12 76.6 62 67.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.2e-11 72.0 56 69.6
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 8.3e-08 61.6 40 75.0


User provided reference genes

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