Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 0.0e+00 1225.3 631 100.0
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 0.0e+00 1170.2 631 95.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.7e-248 862.1 623 69.3
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 2.4e-244 849.0 627 70.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.7e-242 842.8 629 68.4
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.9e-241 839.3 628 67.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 3.2e-241 838.6 628 67.8
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.3e-238 828.6 629 67.9
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 8.2e-237 823.9 634 67.5
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.2e-235 820.1 629 66.8
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.9e-234 815.5 630 67.5
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.0e-234 814.7 630 65.9
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 5.0e-234 814.7 623 65.8
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 8.8e-231 803.9 639 64.2
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 5.7e-230 801.2 566 72.8
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.3e-228 794.7 623 64.8
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.3e-228 794.7 591 69.5
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 9.1e-228 793.9 623 64.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.1e-228 793.9 623 64.7
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.2e-227 793.5 631 65.1
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 4.5e-227 791.6 628 64.5
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.5e-225 786.6 630 65.1
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.9e-225 786.2 628 64.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.9e-225 786.2 624 64.1
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.2e-225 785.0 623 63.7
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.8e-223 779.6 627 62.8
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.6e-222 775.8 659 63.0
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 8.2e-221 770.8 628 63.2
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.4e-220 770.0 625 62.7
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 5.3e-220 768.1 630 61.4
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 5.0e-218 761.5 622 63.3
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 2.7e-216 755.7 616 63.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.6e-216 755.4 640 61.6
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-215 753.4 625 62.7
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.4e-215 753.4 628 61.6
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.8e-215 753.1 624 62.5
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.4e-214 748.4 628 59.9
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.7e-214 748.0 621 63.1
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 9.8e-214 747.3 624 62.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.3e-213 746.9 618 61.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.4e-212 743.4 626 62.3
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.4e-212 743.4 626 62.3
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 3.1e-212 742.3 620 62.7
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.1e-212 742.3 620 63.2
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 7.0e-212 741.1 626 62.3
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.6e-211 740.0 628 59.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.0e-211 739.6 627 60.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.7e-211 739.2 635 60.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-210 737.3 669 58.3
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.3e-210 736.9 629 60.4
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 2.3e-210 736.1 628 60.7
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 3.8e-210 735.3 618 60.7
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.5e-209 733.4 565 67.1
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.9e-209 733.0 628 60.7
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.2e-209 731.9 631 60.1
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 4.7e-208 728.4 630 59.5
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.4e-207 726.9 622 59.6
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.0e-207 725.7 642 59.2
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 3.0e-207 725.7 631 59.7
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 6.8e-207 724.5 658 59.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.4e-206 721.8 620 61.9
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 7.0e-204 714.5 568 63.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 2.7e-203 712.6 634 59.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.8e-199 699.9 633 58.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.5e-198 696.8 632 57.6
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 7.0e-196 688.0 541 66.4
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 8.6e-194 681.0 628 58.1
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.2e-192 677.2 519 66.5
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.1e-192 676.4 528 66.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.7e-192 675.2 528 66.5
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 8.0e-192 674.5 628 57.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.2e-191 671.8 594 58.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.7e-189 666.8 634 57.1
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.9e-189 666.0 630 55.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.4e-188 662.9 629 56.3
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.7e-187 659.4 594 58.2
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 3.5e-187 659.1 567 61.2
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.6e-187 658.7 527 63.4
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 6.6e-186 654.8 630 54.0
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-183 647.5 624 53.7
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 6.8e-183 644.8 624 55.4
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.4e-180 637.1 618 53.6
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 8.9e-175 617.8 624 55.1
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 5.8e-174 615.1 662 51.7
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.9e-173 612.8 547 60.0
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.4e-167 593.2 556 56.7
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 4.0e-167 592.4 624 51.1
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.3e-167 592.0 446 69.3
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.4e-164 583.9 512 58.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.4e-164 582.0 461 64.6
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-163 580.5 605 53.4
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 9.6e-161 571.2 635 49.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.6e-160 570.5 619 48.8
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 8.4e-157 558.1 467 60.0
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 6.7e-154 548.5 658 47.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-150 537.7 628 49.5
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 5.1e-138 495.7 583 48.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.3e-136 488.8 391 61.9
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.5e-124 449.1 364 65.1
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.2e-117 427.2 477 49.3
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.6e-93 345.9 627 32.7
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-92 345.1 384 53.4
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 6.8e-90 335.9 624 33.0
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 4.1e-87 326.6 521 42.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 4.1e-87 326.6 521 42.4
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-81 308.1 629 34.5
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.8e-81 306.2 623 30.7
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 7.8e-78 295.8 379 47.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 4.0e-74 283.5 375 46.7
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.2e-73 282.0 507 33.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.8e-66 256.1 269 49.8
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.5e-57 228.4 278 48.2
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-56 225.3 278 47.8
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.4e-49 200.7 177 58.2
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.8e-41 173.3 160 59.4
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 9.9e-41 172.6 399 29.3
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 8.4e-40 169.5 227 47.1
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.4e-39 167.9 130 69.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 7.1e-39 166.4 142 58.5
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 6.0e-38 163.3 164 51.8
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.0e-34 150.6 263 37.6
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 6.9e-34 149.8 148 50.7
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.6e-33 147.9 366 34.2
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.8e-32 144.1 406 31.3
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.9e-31 141.7 166 41.0
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.3e-31 139.4 142 47.9
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.0e-29 136.0 231 42.4
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.1e-26 125.9 329 27.7
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.5e-23 114.8 405 29.1
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.3e-20 104.4 87 56.3
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-19 102.1 60 81.7
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.7e-19 100.9 80 60.0
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 6.3e-19 100.1 118 40.7
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.5e-16 90.1 87 59.8
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 5.5e-15 87.0 59 69.5
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.5e-15 87.0 152 31.6
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-11 75.5 67 59.7
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.7e-11 75.5 69 52.2
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 8.2e-11 73.2 122 36.9
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.8e-10 72.0 41 80.5
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.5e-09 68.9 94 41.5
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 4.5e-09 67.4 73 50.7
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.5e-08 63.2 96 37.5
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.2e-07 60.8 43 62.8
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 1.2e-06 59.3 42 59.5
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.2e-06 59.3 45 60.0
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 1.6e-06 58.9 131 35.1
Lsat_1_v5_gn_2_25721 Lactuca sativa HOM05D004744 ORTHO05D005655 6.1e-06 57.0 32 78.1


User provided reference genes

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