Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 9.4e-56 219.9 109 100.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 5.5e-32 141.0 94 76.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.0e-30 134.8 95 72.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.0e-29 132.5 94 72.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 4.4e-29 131.3 94 69.1
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.1e-27 126.7 91 70.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 4.1e-27 124.8 92 70.7
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 9.1e-27 123.6 94 66.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 4.5e-26 121.3 92 65.2
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.9e-26 120.9 94 67.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.9e-26 120.9 90 67.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 5.9e-26 120.9 92 66.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 7.7e-26 120.6 93 65.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 7.7e-26 120.6 90 68.9
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.7e-26 120.6 94 62.8
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.7e-26 120.6 98 65.3
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 7.7e-26 120.6 90 67.8
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.0e-25 120.2 94 66.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-25 119.8 92 65.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.7e-25 119.4 93 64.5
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.7e-25 119.4 93 63.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.3e-25 119.0 94 64.9
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.9e-25 118.6 94 67.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.9e-25 118.6 94 67.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.9e-25 118.6 96 62.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.8e-25 118.2 92 67.4
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.8e-25 118.2 93 67.7
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-25 117.5 94 64.9
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-25 117.5 94 64.9
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 6.5e-25 117.5 94 64.9
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 6.5e-25 117.5 94 64.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.5e-25 117.5 94 63.8
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 8.6e-25 117.1 93 64.5
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 8.6e-25 117.1 93 64.5
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-24 116.7 94 63.8
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.5e-24 116.3 95 62.1
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.5e-24 116.3 93 60.2
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.5e-24 116.3 94 63.8
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.5e-24 115.5 96 62.5
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.3e-24 115.2 94 63.8
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.3e-24 115.2 92 62.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 3.3e-24 115.2 94 61.7
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.3e-24 115.2 94 61.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 4.2e-24 114.8 92 64.1
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 5.5e-24 114.4 95 62.1
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 7.2e-24 114.0 94 63.8
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.2e-24 114.0 93 60.2
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 9.5e-24 113.6 92 63.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.5e-24 113.6 100 63.0
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.2e-23 113.2 94 60.6
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.2e-23 113.2 91 62.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-23 112.8 94 61.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.1e-23 112.5 100 62.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.8e-23 112.1 94 61.7
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.8e-23 112.1 99 58.6
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.6e-23 111.7 100 61.0
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.6e-23 111.7 92 65.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.6e-23 111.7 95 58.9
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.7e-23 111.3 94 61.7
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 6.1e-23 110.9 94 61.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 6.1e-23 110.9 94 61.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 6.1e-23 110.9 94 61.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 6.1e-23 110.9 94 61.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 6.1e-23 110.9 92 59.8
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 6.1e-23 110.9 94 59.6
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.0e-23 110.5 92 63.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.0e-22 110.2 92 63.0
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.4e-22 109.8 78 70.5
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.4e-22 109.8 92 62.0
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.8e-22 109.4 94 60.6
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 3.0e-22 108.6 85 63.5
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.0e-22 108.6 99 60.6
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 5.2e-22 107.8 95 58.9
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.8e-22 107.5 91 63.7
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.2e-21 106.7 92 58.7
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.5e-21 106.3 83 62.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.5e-21 106.3 94 60.6
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.0e-21 105.9 93 58.1
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.0e-21 105.9 91 59.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 4.4e-21 104.8 94 60.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.7e-21 104.4 94 59.6
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.5e-21 104.0 120 50.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 9.8e-21 103.6 94 58.5
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.3e-20 103.2 100 59.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.3e-20 103.2 100 59.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.7e-20 102.8 88 62.5
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.2e-20 102.4 93 57.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.8e-20 102.1 81 61.7
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 2.8e-20 102.1 94 57.4
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.7e-20 101.7 85 60.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.7e-20 101.7 91 61.5
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-19 100.1 94 53.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.4e-19 99.0 82 64.6
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 2.4e-19 99.0 87 60.9
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 4.1e-19 98.2 86 60.5
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 7.0e-19 97.4 102 53.9
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.3e-17 93.2 84 57.1
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 2.3e-17 92.4 72 61.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-17 91.3 73 63.0
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.0e-17 91.3 87 56.3
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.1e-16 90.1 81 54.3
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.1e-16 90.1 81 54.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.3e-16 88.6 91 53.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 3.3e-16 88.6 91 50.5
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 5.6e-16 87.8 79 54.4
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.5e-16 87.0 82 57.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.6e-15 86.3 75 58.7
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.1e-15 85.9 76 57.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.8e-15 85.5 76 56.6
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.8e-15 85.5 76 56.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.8e-15 85.5 86 52.3
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.6e-15 85.1 76 55.3
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 4.7e-15 84.7 63 61.9
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 6.1e-15 84.3 94 51.1
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 8.0e-15 84.0 77 55.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 8.0e-15 84.0 63 60.3
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.0e-14 83.6 89 53.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.4e-14 83.2 99 45.5
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.3e-14 82.4 70 57.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.0e-14 82.0 63 63.5
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.0e-14 82.0 63 63.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.0e-14 81.6 62 64.5
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 5.2e-14 81.3 76 53.9
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 6.8e-14 80.9 86 52.3
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.9e-14 80.5 61 68.9
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.9e-14 80.5 63 61.9
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 8.9e-14 80.5 60 63.3
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-13 80.1 79 51.9
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-13 80.1 79 51.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.6e-13 79.0 70 60.0
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 4.4e-13 78.2 63 60.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 7.5e-13 77.4 75 49.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.3e-12 76.6 74 52.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-12 76.6 80 52.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-12 76.3 83 51.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-12 76.3 83 51.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-12 76.3 83 51.8
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.7e-12 76.3 63 58.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.7e-12 76.3 63 58.7
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-12 75.9 70 51.4
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.2e-12 75.9 63 58.7
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.9e-12 75.5 64 64.1
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.9e-12 75.5 64 64.1
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.9e-12 75.5 64 64.1
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.9e-12 75.5 69 58.0
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.9e-12 75.5 61 63.9
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 4.9e-12 74.7 63 58.7
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 8.3e-12 73.9 80 51.2
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.4e-11 73.2 64 62.5
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.4e-11 73.2 64 62.5
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.9e-11 72.8 63 55.6
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.9e-11 72.8 61 62.3
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 4.1e-11 71.6 67 52.2
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.4e-11 71.2 88 47.7
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 7.0e-11 70.9 64 60.9
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.2e-10 70.1 63 54.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.2e-10 70.1 80 48.8
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.6e-10 69.7 73 49.3
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 4.6e-10 68.2 64 59.4
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 4.6e-10 68.2 64 59.4
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 4.6e-10 68.2 64 59.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 4.6e-10 68.2 77 49.4
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 57.8
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 59.4
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 59.4
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 57.8
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 57.8
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 59.4
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 6.0e-10 67.8 64 59.4
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 7.8e-10 67.4 64 57.8
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 7.8e-10 67.4 64 59.4
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-09 67.0 64 59.4
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.3e-09 66.6 64 57.8
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-09 64.7 64 56.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 5.0e-09 64.7 64 56.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 8.6e-09 63.9 64 56.2
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.5e-08 63.2 64 54.7
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.9e-08 62.8 90 45.6
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.5e-08 62.4 64 51.6
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 3.3e-08 62.0 65 49.2
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.6e-08 61.2 61 55.7
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.6e-08 61.2 47 61.7
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-06 55.8 46 58.7
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.0e-06 55.1 82 43.9
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 5.2e-06 54.7 75 48.0
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 5.2e-06 54.7 75 48.0
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.8e-06 54.3 59 42.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 8.9e-06 53.9 46 58.7


User provided reference genes

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