Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 4.3e-119 431.4 230 100.0
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 3.4e-100 368.6 316 65.2
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.7e-86 323.2 189 80.4
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 2.0e-84 316.2 189 78.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.6e-84 315.8 189 78.3
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.9e-83 312.4 193 77.2
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 2.9e-83 312.4 189 77.8
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.9e-83 312.4 189 79.9
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 8.5e-83 310.8 191 78.5
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.1e-82 310.5 189 79.4
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.9e-82 309.7 189 76.2
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.9e-82 309.7 189 78.8
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 2.5e-82 309.3 189 78.8
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.5e-82 309.3 217 70.0
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.2e-82 308.9 193 76.7
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 5.5e-82 308.1 189 77.2
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 7.2e-82 307.8 191 78.0
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 7.2e-82 307.8 191 78.0
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.1e-81 306.2 191 78.0
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 3.6e-81 305.4 189 79.4
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 2.3e-80 302.8 189 77.8
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 3.0e-80 302.4 188 77.7
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 4.0e-80 302.0 193 75.6
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 4.0e-80 302.0 193 75.6
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 5.2e-80 301.6 193 75.6
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 6.7e-80 301.2 188 76.6
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.5e-79 300.1 187 73.3
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.0e-79 299.7 215 70.2
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.6e-79 299.3 191 77.0
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 4.4e-79 298.5 193 74.1
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 4.4e-79 298.5 193 74.1
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 5.7e-79 298.1 193 74.1
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.3e-78 297.0 185 75.7
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.3e-78 297.0 185 75.7
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.8e-78 295.8 193 75.6
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 2.8e-78 295.8 190 73.2
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 3.7e-78 295.4 192 71.9
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 6.3e-78 294.7 185 74.6
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 8.2e-78 294.3 224 65.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.4e-77 293.5 188 76.6
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.4e-77 293.5 190 72.1
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.8e-77 293.1 189 74.1
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 1.8e-77 293.1 193 73.6
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.8e-77 293.1 189 75.1
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.4e-77 292.7 192 73.4
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.4e-77 292.7 185 73.5
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.4e-77 292.7 185 73.5
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 2.4e-77 292.7 187 77.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 4.1e-77 292.0 193 73.1
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.0e-77 291.2 187 74.3
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.0e-77 291.2 181 76.8
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 9.1e-77 290.8 190 75.3
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.2e-76 290.4 188 73.4
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.6e-76 290.0 180 73.9
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 2.0e-76 289.7 193 72.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.7e-76 289.3 186 71.5
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 2.7e-76 289.3 189 71.4
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.7e-76 289.3 189 74.1
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 3.5e-76 288.9 188 72.9
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 4.5e-76 288.5 192 74.0
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.0e-75 287.3 192 70.8
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.3e-75 287.0 193 72.5
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 2.2e-75 286.2 179 75.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 5.0e-75 285.0 191 70.7
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.0e-75 285.0 193 70.5
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 8.5e-75 284.3 183 73.2
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 8.5e-75 284.3 193 71.5
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.1e-74 283.9 193 71.5
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.1e-74 283.9 190 71.1
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.1e-74 283.9 184 73.9
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 3.2e-74 282.3 189 72.0
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.1e-73 278.1 178 74.7
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.8e-72 276.6 189 71.4
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.0e-72 275.8 179 70.4
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 6.8e-72 274.6 193 68.9
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.6e-71 272.7 179 70.9
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 5.7e-71 271.6 177 72.3
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 7.5e-71 271.2 181 72.4
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.3e-70 270.4 189 67.7
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 6.3e-70 268.1 190 65.8
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 1.1e-69 267.3 189 67.2
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 7.0e-69 264.6 191 66.5
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 3.5e-68 262.3 170 72.9
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 3.5e-68 262.3 170 72.9
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 3.5e-68 262.3 189 68.3
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 5.9e-68 261.5 170 72.4
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 7.7e-68 261.2 170 72.4
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 7.7e-68 261.2 170 72.4
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.0e-67 260.8 175 69.7
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.3e-67 260.4 169 72.2
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.7e-67 260.0 170 71.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 1.7e-67 260.0 170 71.8
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.9e-67 259.2 169 71.6
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 2.9e-67 259.2 199 66.8
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 3.8e-67 258.8 170 71.2
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 3.8e-67 258.8 194 65.5
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 3.8e-67 258.8 193 66.3
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 3.8e-67 258.8 170 71.2
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 5.0e-67 258.5 170 70.0
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 1.1e-66 257.3 193 65.3
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-66 256.9 193 67.4
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.2e-66 255.4 192 65.6
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-65 253.8 208 62.0
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 2.1e-65 253.1 170 70.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 2.1e-65 253.1 170 70.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 2.1e-65 253.1 170 70.0
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 4.7e-65 251.9 193 65.8
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.0e-64 250.8 208 60.6
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.4e-64 250.4 188 63.8
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 2.3e-64 249.6 209 60.8
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 5.2e-64 248.4 188 62.8
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 3.1e-61 239.2 188 61.2
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 7.8e-60 234.6 286 46.2
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.0e-57 224.6 167 65.9
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 5.8e-55 218.4 155 66.5
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 2.9e-54 216.1 170 61.2
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 3.7e-54 215.7 192 57.3
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-53 214.2 192 56.8
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 1.9e-53 213.4 189 55.0
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.0e-51 207.6 147 66.7
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 5.0e-51 205.3 131 71.0
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.5e-50 203.8 120 76.7
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.6e-49 200.3 141 66.7
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 6.8e-48 194.9 127 72.4
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.4e-47 192.2 127 71.7
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.8e-47 191.8 115 75.7
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 2.4e-45 186.4 117 71.8
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 5.1e-43 178.7 125 68.0
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.5e-42 177.2 145 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.6e-39 166.4 131 59.5
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.4e-39 166.0 107 71.0
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.9e-37 160.2 139 56.8
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 7.1e-37 158.3 113 60.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.7e-36 156.4 145 53.8
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 9.5e-34 147.9 113 57.5
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 2.9e-30 136.3 94 68.1
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 3.8e-30 136.0 92 68.5
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-27 126.7 115 56.5
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-27 126.7 115 56.5
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.9e-22 109.8 73 67.1
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.7e-19 100.5 67 74.6
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 4.3e-18 95.9 90 50.0
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.8e-17 92.4 76 56.6
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 4.0e-16 89.4 65 63.1
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 5.3e-16 89.0 64 65.6
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 4.6e-12 75.9 73 49.3
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.8e-11 73.9 54 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 9.6e-10 68.2 46 58.7
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-09 67.0 48 64.6


User provided reference genes

Program Settings