Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 3.9e-225 784.6 442 100.0
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 4.5e-189 664.8 446 85.0
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 2.2e-188 662.5 446 84.8
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 2.6e-144 516.2 443 72.0
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 7.7e-48 195.7 449 42.8
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 1.6e-32 144.8 443 34.5
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 5.9e-32 142.9 437 38.4
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 1.1e-30 138.7 397 39.0
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 2.5e-30 137.5 445 35.7
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 2.3e-28 131.0 436 35.6
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 1.1e-25 122.1 471 39.1
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 7.0e-25 119.4 446 34.1
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 7.7e-24 115.9 415 35.9
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 5.5e-22 109.8 483 34.6
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 2.7e-21 107.5 477 32.5
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 4.7e-21 106.7 412 32.5
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 6.1e-21 106.3 455 31.2
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 2.2e-18 97.8 478 29.9
Thecc.09G007200 Theobroma cacao HOM05D019025 ORTHO05D009846 2.2e-18 97.8 451 33.9
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 1.1e-17 95.5 441 32.9
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.4e-17 95.1 482 30.3
FvH4_2g36751 Fragaria vesca HOM05D013263 ORTHO05D009846 1.8e-17 94.7 478 29.7
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 2.7e-16 90.9 445 35.5
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 1.3e-15 88.6 444 29.3
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 2.3e-15 87.8 482 29.5
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 1.5e-14 85.1 476 33.0
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 2.5e-14 84.3 460 32.4
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 9.5e-14 82.4 464 30.6
THA.LOC104814972 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 9.5e-14 82.4 460 32.0
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 2.1e-13 81.3 459 29.0
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 2.1e-13 81.3 415 30.1
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 2.1e-13 81.3 459 29.2
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 2.8e-13 80.9 498 29.1
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 2.8e-13 80.9 476 28.8
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 6.1e-13 79.7 484 33.9
Sed0003431 Sechium edule HOM05D019337 ORTHO05D009846 6.8e-12 76.3 472 31.8
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 8.9e-12 75.9 493 29.2
Gohir.A05G064300 Gossypium hirsutum HOM05D019025 ORTHO05D009846 1.5e-11 75.1 537 27.4
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 1.5e-11 75.1 449 29.4
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 4.4e-11 73.6 496 31.7
CARHR188570 Cardamine hirsuta HOM05D008799 ORTHO05D010975 5.7e-11 73.2 459 34.0
CARHR202650 Cardamine hirsuta HOM05D008799 ORTHO05D010975 9.8e-11 72.4 444 27.9
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 9.8e-11 72.4 448 32.4
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 1.3e-10 72.0 470 29.4
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 1.7e-10 71.6 432 27.5
Gorai.009G067700 Gossypium raimondii HOM05D019025 ORTHO05D009846 2.9e-10 70.9 521 28.0
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 1.8e-09 68.2 465 31.8
Gohir.D05G066900 Gossypium hirsutum HOM05D019025 ORTHO05D009846 4.1e-09 67.0 543 27.1
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 9.2e-09 65.9 481 28.7
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 3.5e-08 63.9 476 29.0
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 5.9e-08 63.2 486 28.2
Glyma.14G134700 Glycine max HOM05D016469 ORTHO05D012811 7.8e-08 62.8 473 28.5
PSO063G5953 Papaver somniferum HOM05D021794 ORTHO05D016335 7.8e-08 62.8 488 27.0
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 7.8e-08 62.8 524 28.1
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 1.0e-07 62.4 47 74.5
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 1.0e-07 62.4 265 32.1
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.0e-07 62.4 482 27.6
AL6G36554 Arabidopsis lyrata HOM05D008799 ORTHO05D010975 1.3e-07 62.0 459 28.8
Ah.10g033870 Amaranthus hybridus HOM05D016385 ORTHO05D018262 1.7e-07 61.6 447 31.8
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 3.0e-07 60.8 52 63.5
AT5G24880 Arabidopsis thaliana HOM05D008799 ORTHO05D010975 3.9e-07 60.5 463 32.2
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 8.6e-07 59.3 492 28.3
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 1.1e-06 58.9 455 29.9
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 1.9e-06 58.2 140 38.6
Thhalv10004239m.g Eutrema salsugineum HOM05D008799 ORTHO05D010975 3.3e-06 57.4 417 27.8
Nn8g40403 Nelumbo nucifera HOM05D021794 ORTHO05D016335 3.3e-06 57.4 488 26.4
Aa31LG11G4080 Aethionema arabicum HOM05D008799 ORTHO05D010975 4.3e-06 57.0 97 45.4
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.3e-06 57.0 51 60.8
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 4.3e-06 57.0 51 60.8
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 4.3e-06 57.0 51 60.8
Sp2g22570 Schrenkiella parvula HOM05D008799 ORTHO05D010975 4.3e-06 57.0 464 28.4
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 4.3e-06 57.0 51 60.8
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 5.6e-06 56.6 323 29.1
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 5.6e-06 56.6 49 63.3
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 7.3e-06 56.2 66 50.0
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 7.3e-06 56.2 49 63.3
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 7.3e-06 56.2 488 26.2
TPR.G1990 Trifolium pratense HOM05D014856 ORTHO05D002235 7.3e-06 56.2 50 60.0
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 7.3e-06 56.2 43 62.8
A02p00590 Brassica napus HOM05D008799 ORTHO05D010975 9.5e-06 55.8 449 28.7
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 9.5e-06 55.8 49 61.2
Lalb_Chr08g0243541 Lupinus albus HOM05D013197 ORTHO05D012811 9.5e-06 55.8 403 32.0


User provided reference genes

Program Settings