Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.6e-89 331.3 172 100.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 3.2e-82 308.5 172 93.0
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 6.6e-80 300.8 170 92.4
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 9.8e-76 287.0 170 90.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.8e-70 268.9 170 79.4
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.6e-70 268.5 172 77.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.7e-70 268.1 172 77.9
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 4.0e-69 265.0 167 79.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 5.2e-69 264.6 170 78.2
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.9e-69 263.8 170 77.1
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-68 263.5 170 76.5
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.5e-68 263.1 170 77.1
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.5e-68 263.1 170 77.6
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.0e-68 262.7 155 81.3
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.6e-68 262.3 170 76.5
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.4e-68 261.9 170 75.9
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.4e-68 261.9 168 77.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 171 77.2
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 4.4e-68 261.5 170 75.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 4.4e-68 261.5 149 83.2
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 7.6e-68 260.8 170 76.5
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-68 260.8 170 76.5
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-68 260.8 170 76.5
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.6e-68 260.8 170 77.6
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 9.9e-68 260.4 170 75.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 9.9e-68 260.4 158 80.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 76.5
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.3e-67 260.0 172 76.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 75.3
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 76.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.7e-67 259.6 176 73.9
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.7e-67 259.6 170 75.3
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.2e-67 259.2 170 75.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 152 80.9
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.9e-67 258.8 170 75.3
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.9e-67 258.8 152 81.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 2.9e-67 258.8 170 77.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 6.4e-67 257.7 168 75.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 6.4e-67 257.7 170 74.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.4e-67 257.3 175 71.4
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 8.4e-67 257.3 152 80.9
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 8.4e-67 257.3 152 80.9
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.4e-67 257.3 170 74.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.1e-66 256.9 170 75.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.4e-66 256.5 170 74.7
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.4e-66 256.5 168 75.0
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.4e-66 256.5 166 77.1
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.4e-66 256.5 170 75.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-66 256.5 170 75.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.9e-66 256.1 172 75.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.9e-66 256.1 180 71.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.9e-66 256.1 178 71.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.9e-66 256.1 149 82.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-66 255.8 152 80.3
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 4.1e-66 255.0 174 72.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 5.4e-66 254.6 170 74.1
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.1e-66 254.2 172 76.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 7.1e-66 254.2 177 72.3
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 9.2e-66 253.8 151 80.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 9.2e-66 253.8 165 74.5
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.6e-65 253.1 170 75.3
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.6e-65 253.1 171 74.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.1e-65 252.7 172 74.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.1e-65 252.7 170 75.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 3.5e-65 251.9 170 71.2
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.5e-65 251.9 170 72.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.5e-65 251.9 149 81.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.6e-65 251.5 172 73.3
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.6e-65 251.5 174 73.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 6.0e-65 251.1 172 72.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 6.0e-65 251.1 174 73.0
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 7.8e-65 250.8 172 73.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.8e-65 250.8 172 73.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 7.8e-65 250.8 174 73.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 7.8e-65 250.8 152 80.9
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-64 250.4 173 72.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.0e-64 250.4 172 73.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-64 250.4 170 74.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-64 250.4 170 74.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.3e-64 250.0 174 72.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.3e-64 250.0 178 70.2
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-64 250.0 172 73.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.3e-64 250.0 171 70.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.7e-64 249.6 178 70.2
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.7e-64 249.6 162 75.3
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.3e-64 249.2 172 72.7
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.0e-64 248.8 172 72.7
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.9e-64 248.4 170 72.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.9e-64 248.4 170 72.4
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 3.9e-64 248.4 174 69.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.6e-64 247.7 170 74.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.1e-63 246.9 169 72.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.5e-63 246.5 149 77.2
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.9e-63 246.1 170 70.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.9e-63 246.1 178 68.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.9e-63 246.1 175 70.9
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 3.3e-63 245.4 155 75.5
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.3e-63 245.4 173 70.5
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.3e-63 245.4 172 70.9
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.3e-63 245.0 169 71.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.3e-63 245.0 181 68.5
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 7.3e-63 244.2 160 72.5
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 7.3e-63 244.2 175 70.3
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 7.3e-63 244.2 171 71.9
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 9.6e-63 243.8 149 77.9
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 9.6e-63 243.8 149 77.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 9.6e-63 243.8 178 69.1
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-62 243.4 169 69.8
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-62 243.4 146 78.8
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-62 243.4 175 70.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.1e-62 242.7 171 70.8
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 6.2e-62 241.1 171 69.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.1e-62 240.7 172 68.6
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 8.1e-62 240.7 170 71.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 8.1e-62 240.7 170 71.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.1e-62 240.7 165 69.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.1e-61 240.4 169 70.4
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.0e-61 238.4 174 66.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 4.0e-61 238.4 159 71.1
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.0e-61 238.4 170 71.2
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 5.2e-61 238.0 182 67.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 6.9e-61 237.7 157 74.5
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 6.9e-61 237.7 152 74.3
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-60 236.5 171 70.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.0e-60 236.1 160 72.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.4e-60 235.3 168 69.6
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 3.4e-60 235.3 168 70.8
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 3.4e-60 235.3 168 70.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 5.8e-60 234.6 164 68.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.3e-59 233.4 153 74.5
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.9e-59 232.3 166 69.9
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.1e-57 226.1 164 68.3
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.5e-57 225.3 150 73.3
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.0e-56 223.8 228 52.6
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.5e-55 219.9 157 70.1
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.6e-55 218.0 165 66.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 7.3e-55 217.6 157 68.8
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.9e-50 203.0 165 61.2
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.9e-50 203.0 145 69.0
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.1e-49 199.5 129 74.4
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 7.9e-49 197.6 152 65.1
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.0e-48 195.7 130 73.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.1e-45 185.7 142 62.0
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.9e-43 179.1 132 65.9
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.3e-39 165.6 130 60.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.3e-39 165.6 111 69.4
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 3.3e-39 165.6 130 63.1
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.8e-38 162.5 130 63.1
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 6.9e-37 157.9 108 75.9
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.6e-36 154.5 161 50.9
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.0e-35 154.1 130 56.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.5e-35 151.4 154 50.0
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.4e-34 150.2 112 70.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.1e-33 146.4 171 53.2
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.0e-33 144.8 88 83.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.4e-29 132.9 116 56.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 5.3e-29 131.7 86 77.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.2e-25 120.6 105 63.8
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 3.0e-24 115.9 98 63.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.3e-23 112.5 93 58.1
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-21 105.9 118 41.5
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.5e-20 103.6 63 74.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 4.5e-20 102.1 71 69.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.7e-20 101.3 117 42.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.7e-20 101.3 117 42.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.7e-19 100.1 115 40.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.7e-17 92.0 149 43.6
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 96 45.8
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 96 45.8
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.5e-15 87.0 65 60.0
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 3.3e-15 85.9 68 58.8
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.4e-13 80.5 55 69.1
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 6.9e-13 78.2 97 38.1
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 5.9e-12 75.1 64 53.1
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 9.4e-10 67.8 110 39.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.0e-07 60.1 44 59.1


User provided reference genes

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