Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.0e-179 630.9 311 100.0
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.9e-150 534.6 312 84.3
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 6.4e-142 507.7 305 82.0
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.3e-128 461.5 309 72.2
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.5e-116 422.2 314 66.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 4.6e-116 421.8 317 65.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-116 421.4 285 70.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-115 420.6 315 65.4
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.8e-115 419.9 315 65.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.5e-114 416.0 307 62.9
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 7.4e-114 414.5 285 69.1
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.4e-112 410.2 279 68.1
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.8e-112 409.8 321 62.9
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.0e-111 406.4 319 63.3
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.0e-111 406.4 310 62.9
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-111 406.4 317 60.9
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.0e-111 406.4 317 60.9
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 5.9e-111 404.8 316 62.3
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.9e-111 404.8 299 65.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.7e-111 404.4 299 65.6
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-110 404.1 284 64.8
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.9e-110 402.5 317 63.1
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.8e-110 402.1 303 64.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.5e-110 401.4 315 61.0
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.4e-109 400.2 323 59.8
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.9e-109 399.8 284 64.8
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.2e-109 399.1 284 64.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 9.4e-109 397.5 307 63.5
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.7e-108 396.0 342 57.9
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.6e-108 395.6 306 67.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 4.6e-108 395.2 299 63.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.0e-107 394.0 325 61.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.3e-106 388.7 321 59.2
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 5.7e-106 388.3 328 58.5
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.1e-104 384.0 308 62.7
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.1e-104 384.0 315 60.0
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.1e-104 382.1 308 61.7
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 5.3e-104 381.7 303 60.4
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 6.9e-104 381.3 294 61.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 9.1e-104 380.9 316 59.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.2e-103 380.6 309 60.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.5e-103 378.6 293 62.5
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.0e-102 377.5 308 60.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.0e-102 377.5 371 53.4
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.0e-102 377.5 282 63.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.7e-102 376.7 306 59.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.9e-102 375.9 320 60.3
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 3.8e-102 375.6 313 59.4
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 3.8e-102 375.6 320 60.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 8.5e-102 374.4 310 60.3
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-101 374.0 291 61.5
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.4e-101 373.6 306 61.8
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.9e-101 373.2 288 63.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.2e-101 372.5 272 65.4
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 4.2e-101 372.1 303 60.1
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 5.5e-101 371.7 309 59.9
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.5e-101 371.7 306 60.1
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 7.2e-101 371.3 284 63.0
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.6e-100 370.2 310 62.6
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.1e-100 369.8 249 68.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 6.1e-100 368.2 300 60.7
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 7.9e-100 367.9 296 59.1
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 7.9e-100 367.9 344 56.1
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.0e-99 367.5 310 58.1
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.0e-99 367.5 315 57.1
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.4e-99 367.1 286 59.4
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.4e-99 367.1 229 72.9
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.4e-99 367.1 274 65.0
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.4e-99 367.1 315 57.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.8e-99 366.7 279 60.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.3e-99 366.3 306 58.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.3e-99 366.3 253 66.0
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 3.9e-99 365.5 320 60.0
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 8.8e-99 364.4 275 63.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.8e-99 364.4 316 59.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.5e-98 363.6 279 60.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.0e-98 363.2 282 62.4
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.3e-97 360.5 280 61.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.3e-97 360.5 278 61.9
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.8e-97 359.4 291 61.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 4.8e-97 358.6 287 62.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 6.3e-97 358.2 367 51.8
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.4e-96 357.1 310 58.4
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.4e-96 357.1 310 58.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.4e-96 357.1 296 58.4
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.1e-96 355.5 275 62.5
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 5.3e-96 355.1 279 60.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.3e-96 355.1 343 53.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 9.1e-96 354.4 273 61.9
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 2.6e-95 352.8 280 61.4
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.6e-95 352.8 331 55.0
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.5e-95 352.4 294 57.5
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.7e-95 351.3 364 51.9
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.3e-94 350.5 276 60.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.9e-94 349.4 277 60.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.0e-94 348.6 281 59.1
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.1e-93 347.4 253 63.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 5.5e-93 345.1 319 56.7
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.2e-92 344.0 278 59.7
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.1e-92 343.2 248 62.5
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.1e-92 343.2 275 60.4
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.3e-91 339.7 273 59.0
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.3e-91 339.7 299 59.9
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.9e-91 339.0 275 58.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.6e-90 336.3 245 64.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.1e-88 329.3 282 58.5
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.1e-88 329.3 196 78.6
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-87 327.4 313 55.9
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.6e-87 327.0 276 57.2
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 9.4e-85 317.8 301 55.5
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-84 317.4 362 47.5
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-83 313.9 313 54.3
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.5e-82 308.1 323 48.9
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.8e-80 303.5 226 63.3
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 8.5e-78 294.7 281 51.2
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.4e-74 282.7 229 60.3
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.4e-72 277.3 245 53.9
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.4e-72 276.6 321 49.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.1e-72 275.8 209 64.1
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.0e-72 275.0 172 75.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-71 273.5 235 57.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.5e-69 266.5 274 50.4
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.6e-63 247.3 236 50.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.6e-63 247.3 210 56.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.8e-60 236.5 195 62.1
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.4e-59 234.2 258 45.0
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.4e-59 234.2 258 45.0
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.1e-59 233.0 177 61.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.0e-59 232.6 155 66.5
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.2e-57 226.9 266 41.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.2e-57 226.9 213 54.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.0e-56 221.9 138 72.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.1e-52 210.3 161 64.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.0e-50 203.8 160 62.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.1e-48 195.3 211 50.2
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.7e-47 193.4 242 40.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.0e-47 192.2 193 51.3
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.8e-43 180.6 116 69.0
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 3.1e-43 179.9 323 35.6
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.0e-38 164.9 190 45.8
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 8.6e-38 161.8 164 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.2e-34 151.4 131 55.7
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 5.8e-34 149.1 150 50.7
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.2e-31 141.4 108 57.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.8e-27 127.5 137 52.6
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 4.2e-24 116.3 169 47.9
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-22 111.7 76 65.8
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 8.7e-22 108.6 71 69.0
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.8e-20 103.6 106 48.1
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 3.1e-19 100.1 136 40.4
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.6e-18 97.1 87 51.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-17 94.4 73 56.2
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.2e-16 89.7 80 57.5
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.0e-11 73.2 99 48.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.9e-09 67.0 36 75.0
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 3.8e-09 66.6 182 29.7


User provided reference genes

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