Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 0.0e+00 2166.3 1122 100.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 0.0e+00 1783.8 1128 84.0
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 0.0e+00 1606.3 1242 70.9
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 0.0e+00 1513.0 1164 71.0
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.1e-159 568.5 1183 38.7
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.9e-159 567.8 1269 36.2
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 3.3e-156 557.0 1197 37.9
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 2.0e-148 531.2 1151 36.8
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 4.7e-142 510.0 1219 36.6
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.7e-134 483.4 1165 36.1
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.5e-132 478.4 1187 37.2
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.8e-123 447.6 1193 34.0
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 1.4e-117 428.7 1280 32.0
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 8.3e-115 419.5 1178 33.4
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 4.1e-114 417.2 1177 33.6
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 4.1e-114 417.2 1177 33.6
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 1.6e-113 415.2 1094 36.3
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 1.3e-112 412.1 1094 36.4
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 1.3e-112 412.1 1094 36.4
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 3.3e-111 407.5 1187 32.9
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.6e-110 404.1 1227 33.3
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 6.2e-110 403.3 1227 33.5
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 8.0e-110 402.9 1232 33.4
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.0e-109 402.5 1232 33.5
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.1e-109 401.0 1231 33.5
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 2.0e-108 398.3 1226 33.0
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.3e-107 395.6 1230 33.3
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.7e-107 394.0 1226 33.0
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.7e-104 385.2 1212 33.3
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.4e-100 370.9 1237 31.6
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.7e-99 367.5 1263 31.2
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.2e-97 362.5 1137 31.6
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 2.3e-96 358.2 1361 30.3
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 6.6e-80 303.5 1456 27.3
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 7.3e-79 300.1 1291 30.4
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.3e-75 289.3 1430 28.0
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.9e-74 285.4 1439 27.1
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 1.6e-65 255.8 1238 28.1
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.0e-65 253.8 1434 26.5
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.0e-61 240.0 1294 26.9
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 5.5e-58 230.7 1147 28.9
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 6.0e-57 227.3 1274 25.8
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.9e-55 222.2 1085 29.9
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.9e-55 222.2 1085 29.9
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.3e-55 221.1 1280 26.8
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 8.5e-51 206.8 1255 26.9
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 4.2e-50 204.5 1241 27.0
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 4.2e-50 204.5 1208 26.1
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.6e-49 201.4 1229 26.9
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 3.9e-48 198.0 1250 26.1
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 3.7e-46 191.4 1341 26.2
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 4.8e-46 191.0 1251 26.6
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.3e-45 187.6 1212 26.6
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.6e-44 185.3 1503 24.3
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.4e-40 172.9 1232 25.4
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.3e-40 172.2 1129 28.2
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.9e-40 171.4 1243 26.2
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 8.8e-40 170.2 1143 27.5
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 4.3e-39 167.9 1368 26.0
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 9.7e-39 166.8 1228 25.1
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.1e-37 160.2 931 26.9
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.5e-36 159.5 1138 27.1
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.7e-35 156.0 1422 25.1
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 5.0e-35 154.5 222 49.1
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.1e-34 153.3 1409 25.1
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.1e-34 153.3 1291 25.8
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.9e-34 152.5 1257 25.4
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 3.2e-34 151.8 1136 28.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.5e-34 151.0 1332 26.1
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.6e-33 149.4 1235 24.3
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 3.6e-33 148.3 1119 27.1
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 6.1e-33 147.5 1137 27.9
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 3.3e-31 141.7 519 33.1
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 3.3e-31 141.7 1257 24.7
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 1.3e-30 139.8 517 30.9
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 4.8e-30 137.9 306 35.9
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 8.2e-30 137.1 579 31.6
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 1.4e-29 136.3 1234 24.0
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.8e-29 136.0 546 32.1
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 3.1e-29 135.2 574 30.1
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 5.9e-28 131.0 670 29.6
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 5.9e-28 131.0 670 29.6
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.7e-28 130.6 1163 26.7
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.0e-27 130.2 670 29.6
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.0e-27 130.2 1114 24.5
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.5e-26 125.6 545 31.2
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-25 123.2 1237 25.1
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 1.1e-21 110.2 1109 23.7
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 7.0e-21 107.5 1239 24.3
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 3.8e-19 101.7 1032 26.0
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.5e-18 99.8 1257 24.7
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 5.5e-18 97.8 492 30.5
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.5e-18 97.8 1347 24.6
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 4.7e-17 94.7 1180 23.6
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.0e-16 93.6 318 31.4
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.8e-16 92.8 1261 24.7
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 2.3e-16 92.4 608 28.0
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 4.0e-16 91.7 1278 23.2
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 6.8e-16 90.9 1030 25.1
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.5e-15 89.7 1342 23.4
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 2.6e-15 89.0 1258 23.7
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 9.8e-15 87.0 1339 23.8
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 1.3e-14 86.7 1204 23.7
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 3.7e-14 85.1 403 26.6
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.3e-14 84.0 478 27.4
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 1.4e-13 83.2 602 27.6
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.4e-13 83.2 1256 23.8
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 2.4e-13 82.4 956 24.6
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 4.1e-13 81.6 1128 22.9
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 2.0e-12 79.3 322 27.6
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 2.7e-12 79.0 542 28.2
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 5.0e-11 74.7 1284 23.8
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 5.0e-11 74.7 186 32.8
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 8.5e-11 73.9 196 38.3
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.9e-10 72.8 1113 23.6
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 4.2e-10 71.6 1223 23.7
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 4.2e-10 71.6 703 26.2
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 5.5e-10 71.2 1140 23.2
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 1.6e-09 69.7 1200 24.2
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.1e-09 69.3 1409 23.3
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 2.1e-09 69.3 1118 22.4
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 6.1e-09 67.8 193 34.2
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 8.0e-09 67.4 330 27.3
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 8.8e-08 63.9 1250 23.5
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 9.8e-07 60.5 325 27.1
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 3.7e-06 58.5 1132 24.4
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 6.3e-06 57.8 706 24.2


User provided reference genes

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