Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.8e-103 378.6 195 100.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 8.2e-87 323.9 197 88.3
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.1e-70 270.4 200 73.0
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 8.6e-68 260.8 197 72.6
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 6.2e-42 174.9 184 57.1
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.4e-38 162.9 188 54.8
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.7e-29 132.9 200 49.0
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 7.8e-29 131.3 182 47.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.7e-28 130.2 189 49.2
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.1e-26 123.2 198 46.0
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 3.6e-26 122.5 199 45.7
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 4.8e-26 122.1 190 43.2
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 4.8e-26 122.1 199 46.2
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.1e-25 120.9 180 48.3
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-25 120.6 200 45.5
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.4e-25 119.8 187 43.9
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 6.9e-25 118.2 188 44.7
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-24 117.1 200 44.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.0e-24 116.7 179 48.6
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.4e-24 115.9 182 45.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 5.8e-24 115.2 189 47.1
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.8e-24 115.2 179 48.6
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 9.9e-24 114.4 170 46.5
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.7e-23 113.6 199 43.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-23 113.2 179 47.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-23 113.2 179 49.2
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.9e-23 112.8 193 44.6
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 6.4e-23 111.7 195 44.6
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 8.4e-23 111.3 196 44.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.1e-22 110.9 213 41.8
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.1e-22 110.9 193 45.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.1e-22 110.9 193 42.5
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.9e-22 110.2 188 44.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.9e-22 110.2 202 42.6
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.9e-22 110.2 186 43.5
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.9e-22 110.2 196 43.4
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.9e-22 110.2 197 43.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-22 109.8 175 41.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.2e-22 109.4 188 44.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.2e-22 109.0 175 41.7
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 4.2e-22 109.0 180 42.8
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 4.2e-22 109.0 185 42.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.2e-22 109.0 198 44.4
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 5.4e-22 108.6 191 43.5
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 7.1e-22 108.2 186 44.6
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 9.3e-22 107.8 186 44.6
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 9.3e-22 107.8 187 44.4
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.6e-21 107.1 192 40.6
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.6e-21 107.1 191 43.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.1e-21 106.7 199 44.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.7e-21 106.3 186 43.5
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.7e-21 106.3 180 44.4
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 3.5e-21 105.9 190 42.6
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.5e-21 105.9 202 42.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 4.6e-21 105.5 180 45.0
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.0e-21 105.1 205 43.9
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 7.9e-21 104.8 185 41.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.0e-20 104.4 200 39.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.3e-20 104.0 188 43.6
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.3e-20 104.0 191 42.9
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.8e-20 103.6 191 42.4
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 8.7e-20 101.3 185 42.7
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.7e-20 101.3 171 42.1
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.1e-19 100.9 171 42.1
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.1e-19 100.9 207 39.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.5e-19 100.5 188 40.4
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.5e-19 100.5 78 71.8
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.5e-19 100.5 171 41.5
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.5e-19 100.5 178 43.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.5e-19 100.5 195 43.1
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.9e-19 100.1 190 40.0
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.9e-19 100.1 183 42.6
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 3.3e-19 99.4 188 37.8
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.3e-19 99.4 195 42.6
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.3e-19 99.0 206 40.8
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.3e-19 99.0 182 40.7
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.6e-19 98.6 205 42.4
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.3e-18 97.4 182 42.3
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.3e-18 97.4 182 42.3
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-18 97.1 147 48.3
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.1e-18 96.7 174 42.5
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.1e-18 96.7 169 42.6
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.8e-18 96.3 202 39.6
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.8e-18 96.3 201 39.8
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.8e-18 95.5 205 41.0
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 4.8e-18 95.5 187 41.2
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 4.8e-18 95.5 201 39.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 4.8e-18 95.5 201 39.8
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.8e-18 95.5 212 38.2
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.4e-17 94.0 208 39.4
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.4e-17 94.0 184 39.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.0e-17 92.4 198 41.9
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 5.3e-17 92.0 197 40.1
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.9e-17 91.7 196 39.3
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 9.0e-17 91.3 208 40.4
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.2e-16 90.9 189 40.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-16 90.9 189 40.2
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.2e-16 90.9 178 39.9
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.2e-16 90.9 168 39.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.5e-16 90.5 207 36.7
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-16 90.5 200 38.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.0e-16 90.1 189 36.5
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.6e-16 89.7 194 36.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 4.5e-16 89.0 173 41.0
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 4.5e-16 89.0 173 41.0
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.5e-16 89.0 216 38.4
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 7.6e-16 88.2 191 37.7
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.6e-16 88.2 216 36.6
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.2e-15 86.7 199 37.7
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.9e-15 86.3 207 37.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.9e-15 85.5 209 38.3
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.1e-14 84.3 200 38.5
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.1e-14 84.3 182 41.2
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-14 84.3 183 38.3
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.4e-14 84.0 187 39.6
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-14 83.6 199 37.7
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.9e-14 83.6 198 37.9
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 3.2e-14 82.8 188 37.8
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.2e-14 82.8 65 64.6
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 4.2e-14 82.4 191 34.6
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.5e-14 82.0 203 37.9
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 5.5e-14 82.0 210 39.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.2e-13 80.9 187 37.4
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.6e-13 80.5 151 45.7
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-13 80.1 198 38.4
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.5e-13 79.3 194 36.6
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 6.0e-13 78.6 79 58.2
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 7.9e-13 78.2 196 34.7
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.0e-12 77.8 78 56.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.3e-12 77.4 201 36.3
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.3e-12 77.4 174 37.4
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.3e-12 77.4 70 52.9
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.8e-12 77.0 133 43.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 2.3e-12 76.6 79 54.4
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.9e-12 75.9 202 32.7
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 6.7e-12 75.1 181 35.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 8.7e-12 74.7 183 38.3
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 8.7e-12 74.7 189 37.0
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.1e-11 74.3 195 35.9
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.5e-11 73.9 195 34.4
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.5e-11 73.2 173 35.8
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 5.6e-11 72.0 200 36.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.1e-10 70.1 61 60.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.7e-10 69.3 149 38.3
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 8.2e-10 68.2 201 31.8
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.8e-09 67.0 60 56.7
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.1e-09 66.2 198 31.3
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 3.4e-08 62.8 187 33.7
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 4.5e-08 62.4 60 60.0
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.3e-07 60.8 74 47.3
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 6.5e-07 58.5 39 69.2


User provided reference genes

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