Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.3e-215 751.9 371 100.0
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.9e-205 718.4 369 95.4
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.6e-192 676.0 375 88.3
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 6.2e-192 674.1 371 88.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 7.3e-177 624.0 377 79.8
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 4.8e-160 568.2 364 75.3
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 6.0e-155 551.2 367 72.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.5e-153 546.6 368 73.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.8e-151 539.7 370 70.8
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 2.6e-150 535.8 365 70.7
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 3.4e-150 535.4 376 71.5
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 4.5e-150 535.0 372 71.2
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 2.2e-149 532.7 365 68.8
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 2.2e-149 532.7 365 68.8
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.1e-148 530.4 374 69.5
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 5.5e-148 528.1 365 67.9
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.6e-147 526.6 369 68.6
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 3.5e-147 525.4 365 68.5
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.0e-146 523.9 364 69.5
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.2e-142 510.4 364 68.7
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.5e-142 510.0 364 67.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 2.6e-142 509.2 365 67.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.3e-141 506.9 375 66.7
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.9e-141 505.8 376 65.4
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.0e-141 505.0 376 65.2
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.9e-140 503.1 364 69.0
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 9.4e-140 500.7 371 64.7
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.2e-139 500.4 368 67.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.1e-139 499.6 370 63.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.6e-139 498.8 376 64.6
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 7.9e-139 497.7 364 66.5
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 7.9e-139 497.7 365 65.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.0e-138 497.3 371 66.3
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.3e-138 496.1 369 66.1
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.0e-137 493.0 377 65.5
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.5e-137 492.7 369 64.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-136 490.0 377 65.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 8.2e-136 487.6 371 63.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-135 487.3 371 64.7
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 4.1e-135 485.3 375 64.8
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 5.3e-135 485.0 376 63.6
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 5.3e-135 485.0 357 66.9
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.9e-135 484.6 372 64.5
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.9e-135 484.6 377 64.7
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.0e-134 483.0 371 64.2
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 4.5e-134 481.9 372 64.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.5e-134 481.9 366 64.5
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 5.9e-134 481.5 369 65.0
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.0e-133 480.7 366 64.2
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-133 480.7 366 64.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.7e-133 479.9 370 62.7
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.9e-133 479.2 370 61.9
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-133 478.0 366 63.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-133 478.0 366 63.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 6.5e-133 478.0 373 62.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.5e-132 476.1 364 62.6
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 3.2e-132 475.7 372 63.7
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 5.5e-132 474.9 364 61.8
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 7.2e-132 474.6 372 63.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 7.9e-131 471.1 367 61.9
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 7.9e-131 471.1 367 61.9
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.4e-130 470.3 367 61.6
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.4e-130 470.3 376 60.6
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 5.1e-130 468.4 370 62.2
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.8e-130 467.6 366 62.8
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.5e-129 466.8 368 62.0
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 4.4e-129 465.3 364 62.4
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 5.7e-129 464.9 383 61.1
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 7.4e-129 464.5 366 62.6
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 7.4e-129 464.5 372 63.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.8e-127 459.9 371 60.4
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.6e-126 456.8 351 63.2
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 4.5e-126 455.3 370 62.7
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.3e-125 453.8 364 63.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.2e-124 449.1 372 61.8
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.2e-123 447.2 372 62.4
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.6e-123 445.7 366 63.1
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 3.0e-122 442.6 369 62.1
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.7e-120 436.8 366 60.9
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.2e-120 436.4 370 61.9
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.8e-120 436.0 370 61.6
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-119 433.3 381 59.3
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.8e-119 433.3 374 60.7
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 4.1e-119 432.2 367 61.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.1e-119 431.0 374 57.0
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.0e-118 429.9 373 60.3
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.0e-117 427.6 372 59.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.3e-117 427.2 373 59.5
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 5.0e-117 425.2 367 58.6
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.5e-117 424.9 368 59.8
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.5e-116 422.9 345 60.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-116 421.8 359 57.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 5.5e-116 421.8 372 59.4
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 9.4e-116 421.0 371 58.8
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.1e-115 419.9 368 56.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.4e-113 412.5 368 57.3
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.4e-113 412.1 362 58.0
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.2e-112 409.8 369 57.5
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.8e-112 409.5 380 56.1
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.4e-111 406.4 367 55.6
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.9e-109 399.4 365 57.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 3.8e-109 399.1 355 58.9
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 6.5e-109 398.3 352 55.4
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 8.0e-99 364.8 336 55.7
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 8.0e-99 364.8 336 56.2
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.2e-94 350.9 458 43.7
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.1e-87 327.8 368 47.6
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.0e-86 322.0 289 52.9
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.7e-85 320.5 367 46.0
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 8.6e-85 318.2 298 55.7
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 7.3e-84 315.1 374 45.7
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.1e-79 299.3 363 43.5
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.3e-77 293.5 352 45.2
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 4.0e-74 282.7 343 45.5
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 8.9e-74 281.6 342 45.9
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.2e-64 250.4 371 38.5
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 3.5e-62 243.0 372 38.4
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.3e-61 241.1 182 63.7
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.9e-60 237.3 198 59.1
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 2.8e-59 233.4 233 54.5
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 9.3e-55 218.4 202 50.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.3e-48 198.0 177 57.1
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.4e-48 195.3 251 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.9e-44 184.1 243 41.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 2.4e-42 177.2 162 55.6
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-39 167.2 130 60.0
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.5e-39 166.0 130 60.8
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.3e-37 160.6 299 31.1
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 5.1e-37 159.5 160 50.0
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.1e-34 150.2 130 57.7
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 4.6e-30 136.3 247 40.1
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.8e-29 134.4 93 64.5
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.3e-29 134.0 93 64.5
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.9e-29 133.3 93 63.4
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.3e-28 130.2 93 61.3
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 9.7e-28 128.6 107 62.6
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.1e-26 122.1 98 59.2
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.2e-24 117.5 111 51.4
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.6e-22 111.3 291 27.5
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 6.1e-22 109.4 89 64.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.7e-19 101.3 96 56.2
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.7e-19 101.3 96 56.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.2e-19 100.9 70 64.3
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 4.2e-15 86.7 182 37.4
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.4e-15 85.5 81 54.3
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.8e-13 81.3 65 60.0
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.1e-12 78.6 75 52.0
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 2.8e-11 73.9 94 43.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 3.7e-11 73.6 45 82.2
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 2.0e-09 67.8 58 56.9


User provided reference genes

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