Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1489.6 740 100.0
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1417.9 741 94.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1338.2 742 88.9
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1323.5 748 86.5
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1315.1 743 87.3
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1315.1 748 86.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1310.0 746 86.3
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1299.6 746 86.1
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1298.1 745 85.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1297.3 742 86.4
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 751 86.2
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 745 85.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1291.6 747 85.8
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1291.2 751 85.8
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1289.6 749 84.8
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1288.5 750 85.5
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1286.9 747 84.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1285.4 741 85.6
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 739 85.8
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 748 84.8
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 750 85.1
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1279.2 745 85.1
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1278.8 744 84.9
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1277.3 744 84.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1276.9 740 85.3
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1275.4 747 84.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 750 83.9
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 744 84.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 748 84.1
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 746 85.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 741 85.6
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1268.8 746 83.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 741 83.8
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 750 83.5
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1268.1 745 83.8
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1267.3 746 84.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 747 83.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1266.5 746 83.2
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 745 83.8
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 745 83.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 750 83.3
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 745 83.9
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 743 84.3
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 741 83.7
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1263.4 746 84.2
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 746 84.2
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 741 83.3
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 740 83.4
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1261.1 739 83.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 750 82.7
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 744 83.6
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 747 83.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 745 83.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 747 83.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 722 85.5
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 744 83.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 708 86.4
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 778 80.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 739 83.2
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 747 82.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 744 83.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 746 82.4
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 748 83.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 746 82.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 746 83.1
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 745 82.1
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 745 83.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 746 82.6
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 747 82.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 800 79.1
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 747 82.1
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 757 81.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 747 81.7
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 746 81.2
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 740 82.8
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 747 81.7
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 750 82.1
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 747 81.7
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 747 81.7
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 746 81.6
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 746 81.4
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 743 82.9
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 747 81.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 747 81.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 757 81.5
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 752 81.1
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 745 80.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 750 81.1
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 736 81.7
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 779 78.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 742 81.1
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 749 80.4
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 841 74.1
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 748 80.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 699 84.1
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 748 79.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 748 81.6
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 709 82.8
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 709 82.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 709 82.4
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 746 79.5
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 718 81.3
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 734 78.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 658 87.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 746 79.1
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1174.1 746 78.2
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 740 78.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1165.6 658 85.7
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1161.7 658 85.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1154.0 747 77.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1144.4 661 84.9
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 730 76.8
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1132.1 747 77.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1127.5 718 77.2
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1123.2 658 84.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1108.6 1036 58.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.3e-310 1069.3 622 84.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 4.7e-308 1060.8 748 74.1
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.4e-291 1006.1 679 70.3
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 6.6e-286 987.3 676 70.3
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.3e-285 984.9 678 69.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.8e-283 979.2 688 69.5
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.2e-283 977.6 675 70.1
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.2e-283 977.6 675 70.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.6e-282 975.3 675 69.9
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-259 899.4 593 76.1
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 9.3e-256 887.1 593 75.5
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.2e-248 862.1 679 61.1
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.9e-230 802.0 679 58.5
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 5.9e-226 788.1 698 56.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.7e-215 752.7 676 55.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.4e-210 735.7 674 61.3
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.3e-196 690.6 676 52.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 4.7e-175 619.0 708 47.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.0e-165 587.0 361 77.8
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.8e-157 558.9 320 87.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 9.9e-157 558.1 305 87.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.2e-140 503.8 297 85.2
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 8.1e-135 485.3 301 81.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.3e-132 478.0 236 99.2
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 6.0e-130 469.2 309 73.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.1e-126 456.8 294 74.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 8.4e-124 448.7 241 93.4
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-99 368.6 219 81.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.1e-98 362.8 300 65.3
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.0e-97 360.5 297 64.3
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.7e-87 328.2 224 76.3
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 3.8e-76 290.4 172 80.2
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.7e-66 256.9 126 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.8e-65 255.0 400 44.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.0e-64 251.5 366 38.3
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 8.3e-63 246.1 163 75.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 5.9e-61 240.0 260 53.5
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-59 233.4 114 96.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 6.4e-47 193.4 122 78.7
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 4.1e-46 190.7 135 72.6
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.6e-45 187.2 117 77.8
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.1e-41 176.0 102 77.5
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-40 172.6 157 58.6
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 8.6e-36 156.4 103 73.8
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 8.9e-33 146.4 142 51.4
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.4e-31 140.2 117 65.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.3e-28 132.5 83 77.1
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.6e-28 130.2 138 55.8
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.5e-27 129.0 105 60.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.1e-26 123.2 61 90.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 9.9e-24 116.3 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.2e-23 115.2 221 30.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-21 109.4 135 51.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.2e-15 88.6 82 54.9
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 6.7e-12 77.0 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.6e-10 72.4 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.1e-06 57.0 57 54.4


User provided reference genes

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