Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.5e-82 309.3 138 100.0
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.2e-73 276.9 135 91.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.3e-72 274.2 138 90.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-69 266.5 136 88.2
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.7e-65 251.5 133 82.0
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.1e-64 248.4 134 79.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.1e-64 248.1 137 78.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 9.1e-64 246.9 134 79.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 9.1e-64 246.9 134 79.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 9.1e-64 246.9 134 79.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.6e-63 245.4 134 79.1
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-62 243.4 127 80.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 73.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 77.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 79.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 5.0e-62 241.1 128 82.8
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 5.0e-62 241.1 130 78.5
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.5e-62 240.7 127 79.5
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 6.5e-62 240.7 127 78.0
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 6.5e-62 240.7 134 78.4
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 8.5e-62 240.4 134 75.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 8.5e-62 240.4 134 75.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 77.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.4e-61 239.6 127 80.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.4e-61 239.6 134 75.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.9e-61 239.2 127 80.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.5e-61 238.8 134 76.1
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.5e-61 238.8 127 77.2
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.5e-61 238.8 134 74.6
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.2e-61 238.4 127 78.0
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 3.2e-61 238.4 134 76.9
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.2e-61 238.4 134 75.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.2e-61 238.0 134 74.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 9.4e-61 236.9 127 77.2
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.4e-61 236.9 127 77.2
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-60 236.5 127 75.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.6e-60 236.1 127 76.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.7e-60 235.3 127 76.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.7e-60 235.3 127 76.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 73.1
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.6e-60 235.0 135 74.1
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.7e-60 234.6 130 76.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.7e-60 234.6 135 75.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.7e-60 234.6 127 76.4
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 6.1e-60 234.2 134 74.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.1e-60 234.2 126 77.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.4e-59 233.0 127 74.0
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 2.3e-59 232.3 134 73.9
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.9e-59 231.5 134 72.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.1e-59 231.1 127 74.8
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 5.1e-59 231.1 126 75.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.7e-59 230.7 127 76.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.1e-58 229.9 134 74.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-58 229.9 134 71.6
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.5e-58 229.6 122 84.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.0e-58 229.2 127 70.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 73.1
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.3e-58 228.4 127 74.8
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.3e-58 228.4 123 78.0
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.3e-58 228.4 127 74.0
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 5.7e-58 227.6 126 75.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 7.4e-58 227.3 127 74.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 7.4e-58 227.3 127 74.0
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 7.4e-58 227.3 127 74.0
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.4e-58 227.3 127 71.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 9.7e-58 226.9 127 74.0
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.7e-58 226.9 127 70.1
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 9.7e-58 226.9 122 77.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-57 226.5 127 74.0
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.7e-57 226.1 127 71.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.2e-57 225.7 129 72.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.8e-57 225.3 127 74.8
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.8e-57 224.6 127 72.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.8e-57 224.6 127 70.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 8.2e-57 223.8 127 73.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.2e-57 223.8 121 74.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 8.2e-57 223.8 127 72.4
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.1e-56 223.4 127 72.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.1e-56 223.4 127 70.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 71.6
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.8e-56 222.6 127 71.7
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-56 222.2 121 71.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.4e-56 222.2 127 74.0
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 3.1e-56 221.9 173 60.7
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.1e-56 221.9 136 69.1
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 4.1e-56 221.5 127 69.3
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.1e-56 221.5 124 74.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.1e-56 221.5 127 73.2
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 9.1e-56 220.3 127 70.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.5e-55 219.5 133 71.4
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-55 219.5 127 70.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.0e-55 219.2 127 70.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.0e-55 219.2 127 69.3
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.0e-55 219.2 127 69.3
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.0e-55 219.2 132 72.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.6e-55 218.8 125 74.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.5e-55 218.4 130 70.0
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.5e-55 218.4 127 68.5
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-55 218.4 127 72.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.5e-55 218.4 134 70.1
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 4.5e-55 218.0 121 76.0
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 5.9e-55 217.6 134 69.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 7.7e-55 217.2 127 70.1
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 7.7e-55 217.2 127 70.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 7.7e-55 217.2 127 70.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.0e-54 216.9 127 68.5
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.9e-54 215.3 121 72.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.8e-54 214.9 123 72.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.8e-54 214.9 127 69.3
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-53 213.0 127 71.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.6e-52 208.4 133 64.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.6e-52 208.4 126 70.6
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.6e-52 208.4 125 68.8
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.1e-52 207.6 124 67.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.8e-51 206.1 125 68.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-51 206.1 121 72.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 5.2e-51 204.5 132 66.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-50 203.4 121 69.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-50 202.6 133 63.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.0e-50 202.6 122 67.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.4e-50 201.4 133 62.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 8.2e-49 197.2 124 68.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.4e-48 196.4 132 62.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.1e-48 194.9 116 69.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-48 194.1 127 61.4
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.6e-47 193.0 132 63.6
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.2e-46 189.1 129 62.8
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.7e-44 182.2 120 63.3
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-44 181.8 126 62.7
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.7e-44 181.4 107 71.0
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 5.2e-43 177.9 101 72.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.7e-42 174.5 119 63.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.2e-41 172.6 128 60.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 6.3e-41 171.0 122 55.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.1e-40 168.7 118 62.7
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.6e-39 166.4 96 74.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-39 166.0 123 60.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.7e-39 165.6 128 60.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.9e-38 162.2 115 59.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.3e-35 152.5 89 76.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.8e-33 145.6 85 71.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.4e-32 141.4 90 66.7
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.7e-31 139.0 75 81.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.5e-29 132.5 146 40.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.8e-27 126.3 74 78.4
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.8e-26 120.6 112 49.1
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.4e-24 116.7 62 77.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.9e-23 111.3 78 57.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.3e-21 105.1 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.3e-17 93.6 80 52.5


User provided reference genes

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