Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.0e-78 296.6 138 100.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.9e-71 270.8 138 90.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.9e-67 258.1 136 86.0
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.1e-64 248.1 135 83.7
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.1e-59 231.1 131 77.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.5e-58 229.6 131 76.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.5e-58 229.6 135 74.8
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.4e-58 228.0 131 76.3
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 5.7e-58 227.6 131 75.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.7e-57 226.1 139 71.9
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 74.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.8e-57 225.3 131 74.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.3e-57 224.2 131 73.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 8.2e-57 223.8 131 71.8
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.1e-56 223.4 135 74.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.4e-56 223.0 131 71.8
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.8e-56 222.6 131 74.0
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.1e-56 221.9 131 72.5
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 4.1e-56 221.5 131 74.0
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.1e-56 221.5 131 73.3
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 4.1e-56 221.5 131 73.3
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.1e-56 221.5 135 74.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.0e-56 220.7 131 72.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.0e-56 220.7 132 70.5
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 7.0e-56 220.7 136 72.8
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.5e-55 219.5 131 74.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.5e-55 219.5 131 74.0
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.0e-55 219.2 131 72.5
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-55 219.2 131 72.5
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 2.6e-55 218.8 131 72.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.5e-55 218.4 131 68.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.5e-55 218.4 131 71.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.5e-55 218.0 131 70.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.5e-55 218.0 137 68.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 4.5e-55 218.0 131 70.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 5.9e-55 217.6 136 70.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 5.9e-55 217.6 135 70.4
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.0e-54 216.9 135 70.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-54 216.9 131 71.8
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.3e-54 216.5 131 71.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-54 216.5 126 74.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.9e-54 215.3 131 69.5
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.9e-54 215.3 131 70.2
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.8e-54 214.9 130 73.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.8e-54 214.9 131 71.0
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 5.0e-54 214.5 126 73.8
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 6.5e-54 214.2 131 70.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 6.5e-54 214.2 131 70.2
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 6.5e-54 214.2 131 70.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 6.5e-54 214.2 126 73.0
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 6.5e-54 214.2 131 70.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.1e-53 213.4 126 75.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-53 213.4 131 71.0
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-53 213.4 121 73.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.5e-53 213.0 130 70.0
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.9e-53 212.6 131 71.8
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.5e-53 212.2 122 82.0
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 4.2e-53 211.5 165 60.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 5.5e-53 211.1 123 74.0
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 5.5e-53 211.1 131 67.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.2e-53 210.7 131 70.2
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 7.2e-53 210.7 126 72.2
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 7.2e-53 210.7 131 69.5
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 9.4e-53 210.3 133 69.9
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 9.4e-53 210.3 131 67.2
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-52 209.9 121 75.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-52 209.5 127 66.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.1e-52 209.1 131 69.5
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.1e-52 209.1 131 68.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.7e-52 208.8 131 69.5
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.6e-52 208.4 131 71.0
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.7e-52 208.0 131 67.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-52 208.0 127 66.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 4.7e-52 208.0 131 69.5
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.1e-52 207.6 126 70.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 6.1e-52 207.6 131 67.2
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 8.0e-52 207.2 131 66.4
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.0e-52 207.2 127 66.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.0e-51 206.8 131 69.5
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.4e-51 206.5 127 69.3
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.4e-51 206.5 131 64.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.4e-51 206.5 131 69.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.4e-51 206.5 131 67.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 3.0e-51 205.3 131 65.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.9e-51 204.9 121 68.6
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.9e-51 204.9 121 71.9
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.9e-51 204.9 126 68.3
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.9e-51 204.9 131 64.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 5.2e-51 204.5 124 69.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 6.7e-51 204.1 131 63.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.8e-51 203.8 131 67.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.1e-50 203.4 131 68.7
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.5e-50 203.0 131 64.1
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.5e-50 203.0 131 64.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.5e-50 203.0 125 69.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.0e-50 202.6 131 64.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.0e-50 202.6 131 64.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.0e-50 202.6 125 68.8
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.3e-50 201.8 130 66.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.3e-50 201.8 131 64.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 9.7e-50 200.3 123 69.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 9.7e-50 200.3 123 69.1
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.3e-49 199.9 131 64.1
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.3e-49 199.9 131 64.1
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.3e-49 199.9 125 70.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-49 199.9 131 67.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.7e-49 199.5 131 62.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.7e-49 199.5 131 67.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 3.7e-49 198.4 131 64.9
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 4.8e-49 198.0 121 71.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.4e-48 195.7 132 66.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.2e-47 193.4 130 62.3
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.6e-47 193.0 125 65.6
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.0e-46 190.3 128 62.5
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.3e-46 189.9 125 64.0
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.7e-46 189.5 126 65.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.9e-46 188.7 130 61.5
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.5e-46 187.6 130 60.8
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 8.5e-46 187.2 132 62.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-45 186.8 121 65.3
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.5e-45 186.4 129 62.0
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.5e-45 185.7 129 61.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.2e-45 184.9 124 65.3
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.1e-44 181.0 122 62.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.3e-43 179.1 116 65.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.8e-43 177.6 127 58.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.6e-42 175.6 132 59.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.5e-42 174.1 126 61.9
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.3e-41 171.0 119 63.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-40 170.2 120 60.8
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.1e-40 168.7 107 68.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 5.0e-38 161.4 101 67.3
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.5e-38 161.0 126 57.1
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-37 160.2 125 57.6
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.2e-37 158.7 126 52.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.2e-37 158.3 131 55.7
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.6e-36 155.2 93 71.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 6.1e-36 154.5 124 59.7
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.0e-35 152.1 115 57.4
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 7.5e-34 147.5 89 74.2
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.5e-31 138.7 85 71.8
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.0e-30 134.8 76 77.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 8.6e-30 134.0 90 63.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.6e-28 128.6 134 42.5
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 8.0e-28 127.5 74 78.4
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-25 120.2 112 50.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.0e-24 114.4 62 75.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-21 105.9 78 56.4
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.3e-21 104.4 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.9e-16 89.7 80 51.2


User provided reference genes

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