Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.4e-82 307.0 138 100.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.1e-72 276.6 135 91.1
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.0e-70 267.7 137 83.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 6.5e-70 267.3 133 87.2
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 6.5e-70 267.3 134 84.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 8.5e-70 266.9 137 83.2
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.4e-69 266.2 134 85.1
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.4e-69 266.2 137 84.7
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.4e-69 266.2 137 83.2
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 9.4e-69 263.5 130 86.2
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-68 262.7 133 85.0
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.1e-68 262.3 137 81.8
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.1e-68 262.3 134 79.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.1e-68 262.3 134 82.8
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.7e-68 261.9 135 82.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.6e-68 261.5 134 84.3
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 3.6e-68 261.5 134 82.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 4.6e-68 261.2 134 83.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.6e-68 261.2 134 85.1
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 6.1e-68 260.8 134 82.8
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 6.1e-68 260.8 137 81.8
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 6.1e-68 260.8 134 81.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.9e-68 260.4 133 85.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-67 260.0 133 84.2
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.0e-67 260.0 134 82.8
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.8e-67 259.2 137 79.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 3.9e-67 258.1 128 87.5
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 8.8e-67 256.9 135 85.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.0e-66 255.8 134 80.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 4.3e-66 254.6 135 77.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.3e-66 254.6 135 80.7
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 5.7e-66 254.2 134 79.9
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 9.7e-66 253.4 120 95.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.7e-65 252.7 134 79.9
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.8e-65 251.9 134 77.6
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.7e-65 251.5 130 79.2
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 3.7e-65 251.5 134 77.6
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 4.8e-65 251.1 136 77.2
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.3e-65 250.8 133 78.9
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.3e-65 250.8 135 83.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.4e-64 249.6 134 77.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 78.4
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 76.9
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.1e-64 248.4 134 77.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.1e-64 248.1 134 78.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.3e-64 247.7 131 80.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 6.9e-64 247.3 134 76.1
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.9e-64 247.3 134 76.1
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 6.9e-64 247.3 134 77.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 6.9e-64 247.3 134 76.9
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.9e-64 247.3 137 76.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 6.9e-64 247.3 134 76.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 9.1e-64 246.9 134 77.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 9.1e-64 246.9 134 77.6
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.4e-63 245.0 134 76.1
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.4e-63 245.0 134 75.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.4e-63 245.0 134 75.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 4.5e-63 244.6 134 76.1
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 5.9e-63 244.2 134 75.4
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.7e-63 243.8 134 74.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 75.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.0e-62 243.4 133 74.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.3e-62 243.0 136 76.5
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 75.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 75.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.7e-62 242.7 129 79.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.2e-62 242.3 134 75.4
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.8e-62 241.5 134 74.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.8e-62 241.5 132 78.0
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.0e-62 241.1 130 74.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.5e-62 240.7 134 74.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 8.5e-62 240.4 123 82.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 8.5e-62 240.4 134 76.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.1e-61 240.0 132 77.3
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.5e-61 238.8 134 74.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-61 238.8 130 73.8
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.2e-61 238.4 134 73.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.2e-61 238.0 134 76.1
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.2e-61 238.0 134 73.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 5.5e-61 237.7 134 73.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.2e-60 236.5 134 75.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.2e-60 236.5 134 72.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.6e-60 236.1 127 78.0
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.6e-60 236.1 131 77.9
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.6e-60 236.1 136 72.8
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.7e-60 235.3 134 75.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 73.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-60 235.0 130 73.1
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 6.1e-60 234.2 134 74.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.9e-60 233.8 130 72.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 7.9e-60 233.8 134 73.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.0e-59 233.4 134 73.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.0e-59 233.4 134 73.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.0e-59 233.4 132 73.5
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 73.1
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 5.1e-59 231.1 134 73.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.1e-59 231.1 176 61.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 6.7e-59 230.7 138 73.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 8.8e-59 230.3 134 72.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.1e-58 229.9 133 73.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.1e-58 229.9 134 72.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 4.4e-58 228.0 133 72.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.7e-58 227.6 121 76.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.7e-58 227.6 128 75.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 9.7e-58 226.9 134 71.6
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.8e-57 225.3 131 72.5
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 3.7e-57 224.9 121 77.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 4.8e-57 224.6 133 69.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 4.8e-57 224.6 133 72.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.8e-56 222.6 134 72.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.8e-56 222.6 132 72.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 5.3e-56 221.1 133 69.2
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.0e-55 219.2 121 74.4
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.5e-55 218.4 126 74.6
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 4.5e-55 218.0 125 72.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.9e-55 217.6 133 66.9
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 133 66.2
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.5e-54 214.2 125 70.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 3.2e-53 211.8 129 69.0
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-52 209.5 121 71.1
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.6e-52 208.4 134 67.9
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.7e-52 208.0 132 65.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 4.7e-52 208.0 132 68.9
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 8.0e-52 207.2 121 71.9
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-50 202.6 130 63.1
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.6e-50 202.2 116 71.6
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-48 196.1 130 66.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 3.1e-48 195.3 131 63.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.2e-46 189.1 107 73.8
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.8e-46 188.3 96 83.3
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.5e-46 187.6 130 60.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.1e-45 186.8 101 77.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.6e-44 181.8 129 57.4
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.8e-43 177.2 130 59.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.6e-42 175.6 135 62.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.4e-42 175.3 134 57.5
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.7e-41 171.8 125 63.2
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.4e-40 169.9 128 60.2
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.4e-40 167.9 131 60.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 7.0e-40 167.5 96 78.1
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 9.4e-37 157.1 93 71.0
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.0e-35 153.7 78 85.9
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.8e-35 150.6 85 74.1
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 6.3e-33 144.4 141 44.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 4.2e-29 131.7 74 81.1
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.2e-27 124.8 69 73.9
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.9e-27 124.0 112 51.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-23 110.9 78 59.0
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-22 110.2 63 73.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.8e-20 102.4 80 58.8


User provided reference genes

Program Settings