Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 1.3e-103 379.8 193 100.0
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.7e-84 316.2 187 86.1
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 9.7e-48 194.1 190 52.6
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 9.7e-48 194.1 190 52.6
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 3.7e-47 192.2 189 55.0
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 1.1e-46 190.7 187 52.4
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 7.0e-46 188.0 187 56.7
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 7.0e-46 188.0 187 54.0
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 1.9e-43 179.9 189 52.4
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 2.5e-43 179.5 191 52.4
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 1.6e-42 176.8 184 50.5
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 4.7e-42 175.3 190 52.1
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 6.1e-42 174.9 184 48.9
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 1.5e-40 170.2 189 49.7
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 3.4e-40 169.1 196 46.9
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 3.4e-40 169.1 189 48.7
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 3.4e-40 169.1 190 49.5
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 7.5e-40 167.9 185 46.5
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 2.4e-38 162.9 187 48.7
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 4.1e-38 162.2 190 47.4
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 9.1e-38 161.0 185 44.9
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.1e-35 154.1 174 44.8
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 1.1e-35 154.1 189 48.7
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 3.3e-35 152.5 166 48.8
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 4.2e-35 152.1 187 47.1
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 1.2e-34 150.6 157 51.0
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 2.8e-34 149.4 154 48.1
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 4.7e-34 148.7 180 46.7
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 4.0e-33 145.6 189 48.7
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 5.2e-33 145.2 150 50.7
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 5.2e-33 145.2 150 50.7
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 6.8e-33 144.8 146 51.4
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 1.2e-32 144.1 188 44.1
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 4.4e-32 142.1 128 53.1
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 5.7e-32 141.7 188 47.3
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 7.5e-32 141.4 187 41.7
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 1.3e-31 140.6 143 50.3
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 2.8e-31 139.4 184 45.7
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 3.7e-31 139.0 156 47.4
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 1.1e-30 137.5 163 45.4
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 1.4e-30 137.1 128 48.4
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 1.8e-30 136.7 150 50.0
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 4.1e-30 135.6 147 46.9
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 9.2e-30 134.4 186 38.2
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 9.2e-30 134.4 140 50.0
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 1.2e-29 134.0 154 46.8
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 1.2e-29 134.0 126 50.0
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 2.7e-29 132.9 115 56.5
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 2.7e-29 132.9 163 45.4
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 4.6e-29 132.1 114 55.3
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 1.0e-28 131.0 166 44.0
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 1.0e-28 131.0 154 44.2
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.7e-28 130.2 150 48.7
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 2.9e-28 129.4 145 45.5
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 5.0e-28 128.6 184 42.9
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 6.6e-28 128.3 166 43.4
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 8.6e-28 127.9 140 46.4
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 3.3e-27 125.9 145 44.8
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 5.6e-27 125.2 174 42.5
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 5.6e-27 125.2 147 45.6
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 7.3e-27 124.8 145 47.6
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 1.6e-26 123.6 136 47.1
Sabra04G0058100 Salix brachista HOM05D007778 ORTHO05D009819 3.6e-26 122.5 122 58.2
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 8.9e-25 117.9 114 52.6
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 2.6e-24 116.3 146 41.8
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 7.5e-24 114.8 180 38.9
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 2.2e-23 113.2 148 41.9
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 8.3e-23 111.3 148 40.5
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.4e-22 108.6 103 49.5
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 2.0e-21 106.7 113 50.4
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 1.0e-20 104.4 121 43.8
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 1.3e-20 104.0 182 37.4
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 2.3e-20 103.2 119 44.5
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 1.9e-19 100.1 141 41.1
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 2.5e-19 99.8 126 41.3
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 3.3e-19 99.4 108 46.3
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 3.3e-19 99.4 201 33.3
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 5.6e-19 98.6 119 42.9
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 7.3e-19 98.2 119 43.7
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 2.1e-18 96.7 108 43.5
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 2.8e-18 96.3 119 42.0
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 4.7e-18 95.5 75 61.3
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 6.2e-18 95.1 131 37.4
Duzib133G0400 Durio zibethinus HOM05D007778 ORTHO05D009819 1.4e-17 94.0 146 41.8
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 3.1e-17 92.8 111 45.0
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 6.8e-17 91.7 142 35.9
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 2.6e-16 89.7 166 38.0
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 8.3e-15 84.7 144 36.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.2e-14 82.8 98 41.8
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 3.2e-14 82.8 98 41.8
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 6.0e-13 78.6 119 37.8
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 2.1e-10 70.1 105 31.4
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 2.8e-10 69.7 105 33.3
PGR083G1335 Punica granatum HOM05D005228 ORTHO05D006208 5.2e-09 65.5 97 33.0
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 1.2e-08 64.3 102 31.4
HanXRQChr11g0339031 Helianthus annuus HOM05D004209 ORTHO05D004970 1.5e-08 63.9 102 32.4
HanXRQChr01g0004411 Helianthus annuus HOM05D004209 ORTHO05D004970 3.4e-08 62.8 105 31.4
Lsat_1_v5_gn_1_123241 Lactuca sativa HOM05D004209 ORTHO05D004970 4.4e-08 62.4 105 29.5
Nitab4.5_0003738g0060 Nicotiana tabacum HOM05D004209 ORTHO05D004970 4.4e-08 62.4 110 28.2
FAN21G1744 Fragaria x ananassa HOM05D004209 ORTHO05D004970 7.6e-08 61.6 102 29.4
CBR_g33939 Chara braunii HOM05D004209 ORTHO05D004970 9.9e-08 61.2 122 27.9
CDE05G0607 Ceratophyllum demersum HOM05D005228 ORTHO05D006208 1.3e-07 60.8 98 35.7
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 2.9e-07 59.7 105 29.5
Hund23509 Selenicereus undatus HOM05D004209 ORTHO05D004970 2.9e-07 59.7 102 27.5
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 3.7e-07 59.3 102 27.5
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 4.9e-07 58.9 120 27.5
FAN25G2308 Fragaria x ananassa HOM05D004209 ORTHO05D004970 6.4e-07 58.5 102 27.5
Peaxi162Scf00257g00046 Petunia axillaris HOM05D005228 ORTHO05D006208 6.4e-07 58.5 97 32.0
Sc24g0000590 Simmondsia chinensis HOM05D004209 ORTHO05D004970 6.4e-07 58.5 105 27.6
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 6.4e-07 58.5 101 28.7
arahy.Tifrunner.gnm1.ann1.1B2UBR Arachis hypogaea HOM05D004209 ORTHO05D004970 1.1e-06 57.8 105 26.7
arahy.Tifrunner.gnm1.ann1.G1SUYP Arachis hypogaea HOM05D004209 ORTHO05D004970 1.1e-06 57.8 105 26.7
Sopen10g002480 Solanum pennellii HOM05D005228 ORTHO05D006208 1.1e-06 57.8 97 32.0
Nitab4.5_0002229g0110 Nicotiana tabacum HOM05D005228 ORTHO05D006208 1.4e-06 57.4 97 30.9
TPR.G33125 Trifolium pratense HOM05D004209 ORTHO05D004970 1.4e-06 57.4 102 29.4
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 1.4e-06 57.4 82 34.1
CAN.G424.102 Capsicum annuum HOM05D004209 ORTHO05D004970 1.9e-06 57.0 124 27.4
Ca_14052_v3 Cicer arietinum L. HOM05D004209 ORTHO05D004970 1.9e-06 57.0 102 29.4
Nn1g03713 Nelumbo nucifera HOM05D005228 ORTHO05D006208 1.9e-06 57.0 97 29.9
MELO3C002510.2 Cucumis melo HOM05D004209 ORTHO05D004970 2.4e-06 56.6 106 27.4
Hund21317 Selenicereus undatus HOM05D004209 ORTHO05D004970 2.4e-06 56.6 103 26.2
PGSC0003DMG400014402 Solanum tuberosum HOM05D005228 ORTHO05D006208 2.4e-06 56.6 97 30.9
MSTRG.13163 Avicennia marina HOM05D004209 ORTHO05D004970 3.2e-06 56.2 102 26.5
MSTRG.6887 Avicennia marina HOM05D005228 ORTHO05D006208 4.1e-06 55.8 98 30.6
Lj2A275T36 Lonicera japonica HOM05D004209 ORTHO05D004970 4.1e-06 55.8 102 27.5
MBI02_g29711_MAGBIO Magnolia biondii HOM05D005228 ORTHO05D006208 4.1e-06 55.8 97 30.9
MD10G1311700 Malus domestica HOM05D004209 ORTHO05D004970 4.1e-06 55.8 102 27.5
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 4.1e-06 55.8 101 27.7
TWI63G1530 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 4.1e-06 55.8 102 25.5
CANSAT56G4323 Cannabis sativa HOM05D004209 ORTHO05D004970 5.4e-06 55.5 102 26.5
SGA_v2.0_scaffold7G03893 Striga asiatica HOM05D004209 ORTHO05D004970 5.4e-06 55.5 102 27.5
ClCG03G005130 Citrullus lanatus HOM05D004209 ORTHO05D004970 7.1e-06 55.1 106 26.4
HanXRQChr05g0159241 Helianthus annuus HOM05D005228 ORTHO05D006208 7.1e-06 55.1 97 30.9
Glyma.07G112000 Glycine max HOM05D004209 ORTHO05D004970 9.2e-06 54.7 105 27.6


User provided reference genes

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