Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.4e-148 528.9 273 100.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.8e-127 459.5 264 90.2
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.7e-125 451.8 264 89.0
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.5e-118 429.9 264 84.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 3.1e-116 422.2 264 81.1
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 4.5e-115 418.3 278 77.7
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.7e-114 416.4 267 80.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.9e-114 415.6 262 80.9
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 8.5e-114 414.1 267 80.9
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.4e-113 413.3 265 80.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.4e-113 413.3 267 81.3
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.5e-113 412.5 267 80.5
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.5e-113 412.5 265 80.0
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 9.4e-113 410.6 267 79.4
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.6e-112 409.8 264 81.4
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.6e-112 409.8 267 79.0
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 2.7e-112 409.1 267 79.4
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.1e-112 407.9 265 79.2
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 2.3e-111 406.0 264 80.3
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.0e-110 402.9 272 76.8
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 7.4e-110 401.0 277 76.9
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.8e-109 398.3 268 78.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.1e-108 397.1 234 85.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.1e-108 395.6 262 76.7
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 4.1e-108 395.2 264 75.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 7.0e-108 394.4 232 85.8
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 7.0e-108 394.4 281 74.7
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 9.1e-108 394.0 272 74.6
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 4.5e-107 391.7 264 75.8
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.7e-107 391.0 264 75.8
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.7e-106 389.8 263 77.9
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 6.5e-106 387.9 264 74.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 8.5e-106 387.5 264 76.1
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.1e-105 387.1 264 75.0
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.1e-105 387.1 264 75.0
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.9e-105 386.3 287 73.5
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.9e-105 386.3 264 73.9
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.2e-105 385.6 263 76.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 3.2e-105 385.6 262 74.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 4.2e-105 385.2 264 74.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.4e-105 384.0 262 74.4
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.2e-104 383.6 260 75.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.2e-104 383.6 264 74.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.6e-104 383.3 260 75.0
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.7e-104 382.5 267 73.8
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.7e-104 382.5 264 74.6
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.6e-104 382.1 266 74.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.4e-103 380.2 260 74.2
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.0e-103 379.0 259 76.4
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 8.8e-103 377.5 232 81.9
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.1e-102 377.1 265 73.6
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.5e-102 376.7 264 73.9
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.0e-102 376.3 264 75.4
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.3e-102 375.6 286 69.2
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 3.3e-102 375.6 259 75.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.4e-102 375.2 259 74.1
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 7.4e-102 374.4 272 72.4
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 9.7e-102 374.0 269 70.6
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.2e-101 372.9 264 74.2
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.2e-101 372.9 263 73.8
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.8e-101 372.5 262 72.9
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.4e-100 370.2 262 72.5
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.4e-100 370.2 264 71.6
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.8e-100 369.8 264 72.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.8e-100 369.8 263 74.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.4e-100 369.4 264 71.6
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 3.1e-100 369.0 264 71.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 7.0e-100 367.9 262 71.0
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.2e-99 367.1 269 71.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.2e-99 367.1 263 73.4
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 3.5e-99 365.5 260 71.9
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 7.7e-99 364.4 235 79.1
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.7e-98 363.2 274 72.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.5e-97 360.1 275 66.9
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.2e-97 359.0 270 69.6
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.2e-96 357.1 340 61.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.2e-96 357.1 259 69.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.1e-96 356.3 287 68.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 6.1e-96 354.8 256 70.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.8e-95 353.2 266 72.6
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.8e-95 353.2 271 70.1
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 4.0e-95 352.1 232 75.9
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 5.2e-95 351.7 258 70.5
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.2e-94 350.5 271 68.3
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 8.3e-93 344.4 264 67.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.8e-92 343.2 213 82.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.8e-90 335.5 261 67.8
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 5.0e-90 335.1 267 66.7
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 5.5e-89 331.6 265 67.9
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 3.6e-88 328.9 265 67.9
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.8e-85 319.3 185 86.5
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 8.3e-85 317.8 271 64.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 8.3e-85 317.8 206 75.2
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-84 317.0 237 66.7
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.7e-83 312.8 185 84.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.1e-81 307.4 191 82.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.9e-81 306.6 240 64.6
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 5.5e-81 305.1 266 61.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.8e-80 302.8 271 60.1
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.8e-79 300.1 203 77.3
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.3e-79 299.7 236 63.1
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-74 283.9 262 59.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.3e-74 283.9 203 69.5
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.0e-71 272.3 242 57.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 7.0e-68 261.5 193 66.8
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.4e-60 236.5 234 56.4
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.7e-59 233.0 255 51.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.3e-53 214.2 146 74.7
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-50 204.5 217 52.1
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.1e-49 201.1 247 48.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-46 191.0 148 68.2
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 5.1e-42 175.6 211 46.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.3e-40 171.0 346 35.3
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.6e-33 145.6 108 69.4
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.0e-30 137.1 205 36.1
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 3.1e-23 113.2 73 75.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 3.1e-23 113.2 73 75.3
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-20 104.0 77 71.4
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 5.5e-20 102.4 98 55.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 5.1e-18 95.9 203 33.5
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-17 94.0 121 49.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 6.1e-11 72.4 49 75.5
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.7e-10 68.6 46 69.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.7e-09 65.9 63 57.1
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.7e-08 63.2 55 58.2
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.1e-07 61.6 104 34.6
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 4.1e-07 59.7 147 28.6
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 4.1e-07 59.7 150 28.0
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 4.1e-07 59.7 138 31.9
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 1.2e-06 58.2 142 27.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-06 58.2 147 26.5
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 1.2e-06 58.2 148 27.0
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 1.5e-06 57.8 143 30.1
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.0e-06 57.4 178 27.0
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 2.6e-06 57.0 151 27.8
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 2.6e-06 57.0 141 28.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.6e-06 57.0 147 25.9
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.6e-06 57.0 147 25.9
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 4.5e-06 56.2 239 23.8
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 4.5e-06 56.2 151 30.5
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 5.9e-06 55.8 139 28.1
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 5.9e-06 55.8 139 28.1
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 5.9e-06 55.8 155 24.5
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 5.9e-06 55.8 222 26.1
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.7e-06 55.5 147 25.2
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 7.7e-06 55.5 142 28.2
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 1.0e-05 55.1 88 34.1
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 1.0e-05 55.1 135 30.4


User provided reference genes

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