Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.1e-35 152.1 97 100.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.0e-21 105.1 98 62.2
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.4e-18 96.3 96 71.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.9e-18 94.0 89 75.3
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 2.6e-17 92.0 92 73.9
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.5e-17 91.3 89 77.5
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 7.6e-17 90.5 89 75.3
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 7.6e-17 90.5 104 65.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.3e-16 89.7 92 69.6
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.9e-16 88.6 96 69.8
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.8e-16 88.2 94 72.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 4.9e-16 87.8 90 73.3
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.9e-16 87.8 84 73.8
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 8.4e-16 87.0 89 76.4
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 8.4e-16 87.0 89 73.0
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-15 86.7 85 75.3
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.1e-15 86.7 89 70.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.9e-15 85.9 90 71.1
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.2e-15 85.1 90 68.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.5e-15 84.3 92 71.7
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 5.5e-15 84.3 90 71.1
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.3e-15 83.6 88 69.3
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.2e-14 83.2 96 66.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.2e-14 83.2 92 68.5
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.2e-14 83.2 92 68.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.2e-14 83.2 89 71.9
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.1e-14 82.4 86 72.1
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.7e-14 82.0 97 68.0
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.7e-14 82.0 75 80.0
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 6.0e-14 80.9 88 67.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 7.9e-14 80.5 89 68.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.9e-14 80.5 74 77.0
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.3e-13 79.0 85 70.6
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 2.3e-13 79.0 91 65.9
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.3e-13 79.0 87 67.8
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 2.3e-13 79.0 98 53.1
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 3.9e-13 78.2 92 65.2
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.9e-13 78.2 96 63.5
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.1e-13 77.8 90 66.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 6.7e-13 77.4 56 69.6
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.7e-13 77.4 89 67.4
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 8.7e-13 77.0 92 47.8
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.5e-12 76.3 93 66.7
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.9e-12 75.9 90 70.0
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.9e-12 75.9 92 63.0
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.5e-12 75.5 82 67.1
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.5e-12 75.5 83 67.5
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.3e-12 75.1 97 67.0
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.3e-12 74.7 83 49.4
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 5.7e-12 74.3 96 61.5
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 5.7e-12 74.3 89 66.3
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 7.4e-12 73.9 93 68.8
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 7.4e-12 73.9 80 63.8
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 7.4e-12 73.9 97 66.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 7.4e-12 73.9 82 69.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.4e-12 73.9 52 65.4
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 9.7e-12 73.6 96 66.7
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.7e-12 73.6 81 71.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.2e-11 72.4 90 70.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 2.2e-11 72.4 88 64.8
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.8e-11 72.0 92 60.9
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 3.7e-11 71.6 82 65.9
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 4.8e-11 71.2 96 66.7
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.8e-11 71.2 101 60.4
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 8.2e-11 70.5 83 65.1
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.1e-10 70.1 85 68.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.1e-10 70.1 48 66.7
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.1e-10 70.1 88 64.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-10 69.7 88 63.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.4e-10 69.7 97 61.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.8e-10 69.3 96 58.3
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.1e-10 68.2 85 62.4
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.1e-10 68.2 76 68.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 5.3e-10 67.8 89 61.8
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 5.3e-10 67.8 82 70.7
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.9e-10 67.4 97 60.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 9.0e-10 67.0 92 44.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 9.0e-10 67.0 86 45.3
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.0e-09 65.9 83 62.7
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.6e-09 65.5 60 60.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.6e-09 65.5 89 64.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.4e-09 65.1 89 60.7
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.4e-09 65.1 89 62.9
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 3.4e-09 65.1 81 65.4
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 4.5e-09 64.7 74 71.6
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 4.5e-09 64.7 48 62.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 5.9e-09 64.3 60 60.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 5.9e-09 64.3 60 60.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 5.9e-09 64.3 89 60.7
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.6e-09 63.9 88 40.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.0e-08 63.5 85 40.0
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-08 63.2 88 59.1
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.3e-08 63.2 82 64.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.3e-08 63.2 77 66.2
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.7e-08 62.8 72 43.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-08 62.8 78 66.7
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-08 62.8 78 62.8
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.9e-08 62.0 90 46.7
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.8e-08 61.6 73 67.1
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.8e-08 61.6 48 64.6
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 5.0e-08 61.2 60 63.3
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 5.0e-08 61.2 51 68.6
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 5.0e-08 61.2 87 59.8
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 5.0e-08 61.2 74 62.2
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.0e-08 61.2 59 57.6
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 6.5e-08 60.8 89 57.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 8.5e-08 60.5 78 62.8
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.5e-08 60.5 78 62.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.5e-08 60.5 78 60.3
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.5e-08 60.5 90 57.8
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 8.5e-08 60.5 90 60.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.1e-07 60.1 50 62.0
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.1e-07 60.1 86 60.5
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-07 60.1 60 50.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.4e-07 59.7 87 42.5
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.4e-07 59.7 62 53.2
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.4e-07 59.7 84 60.7
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.9e-07 59.3 59 55.9
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.9e-07 59.3 92 62.0
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 2.5e-07 58.9 90 40.0
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.5e-07 58.9 75 66.7
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 3.2e-07 58.5 52 55.8
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.2e-07 58.5 86 40.7
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.2e-07 58.5 77 42.9
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.2e-07 58.2 51 62.7
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 7.2e-07 57.4 53 56.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.2e-07 57.4 88 38.6
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-06 56.2 129 40.3
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.6e-06 56.2 58 53.4
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 2.1e-06 55.8 49 61.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.1e-06 55.8 93 55.9
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.7e-06 55.5 92 39.1
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.7e-06 55.5 128 31.2
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.7e-06 55.5 83 41.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 2.7e-06 55.5 91 40.7
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 3.6e-06 55.1 89 59.6
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 3.6e-06 55.1 90 36.7
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.6e-06 55.1 105 38.1
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.6e-06 55.1 62 51.6
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.1e-06 54.3 79 41.8
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.1e-06 54.3 40 60.0


User provided reference genes

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