Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G117230 Populus trichocarpa HOM05D000260 ORTHO05D000318 4.1e-49 197.6 89 100.0
Potri.017G117340 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.4e-12 76.3 42 76.2
ClCG11G007790 Citrullus lanatus HOM05D000260 ORTHO05D000318 1.7e-10 69.3 82 42.7
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 1.4e-09 66.2 44 70.5
Manes.02G070200 Manihot esculenta HOM05D000072 ORTHO05D000026 2.4e-09 65.5 61 52.5
Sabra17G0096800 Salix brachista HOM05D000464 ORTHO05D000408 4.1e-09 64.7 59 50.8
Sabra17G0097300 Salix brachista HOM05D000260 ORTHO05D000318 5.4e-09 64.3 42 66.7
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 9.2e-09 63.5 72 41.7
Gohir.A11G165550 Gossypium hirsutum HOM05D000260 ORTHO05D000318 9.2e-09 63.5 46 58.7
Thecc.07G123600 Theobroma cacao HOM05D000072 ORTHO05D000026 9.2e-09 63.5 73 43.8
Gohir.D11G170700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 1.2e-08 63.2 75 44.0
Gorai.007G182700 Gossypium raimondii HOM05D000072 ORTHO05D000026 1.2e-08 63.2 75 44.0
Gorai.007G183700 Gossypium raimondii HOM05D000260 ORTHO05D000318 1.2e-08 63.2 75 44.0
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.2e-08 63.2 43 65.1
vmacro05530 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 1.2e-08 63.2 46 52.2
Ciclev10011179m.g Citrus clementina HOM05D000260 ORTHO05D000318 2.0e-08 62.4 41 63.4
Ciclev10013644m.g Citrus clementina HOM05D000072 ORTHO05D000026 4.5e-08 61.2 43 60.5
Haze_14164 Corylus avellana HOM05D000260 ORTHO05D000318 4.5e-08 61.2 45 53.3
Gohir.A11G164432 Gossypium hirsutum HOM05D000072 ORTHO05D000026 4.5e-08 61.2 46 54.3
Gohir.D12G053400 Gossypium hirsutum HOM05D000260 ORTHO05D000318 4.5e-08 61.2 74 44.6
Gorai.008G056600 Gossypium raimondii HOM05D000260 ORTHO05D000318 4.5e-08 61.2 74 43.2
Potri.017G117400 Populus trichocarpa HOM05D000260 ORTHO05D000318 4.5e-08 61.2 42 64.3
Ciclev10011232m.g Citrus clementina HOM05D000072 ORTHO05D000026 7.8e-08 60.5 45 57.8
COL.COLO4_09357 Corchorus olitorius HOM05D000464 ORTHO05D000408 7.8e-08 60.5 44 56.8
Potri.004G096675 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.0e-07 60.1 42 69.0
Potri.004G096900 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.0e-07 60.1 42 69.0
Manes.01G112000 Manihot esculenta HOM05D000072 ORTHO05D000026 1.3e-07 59.7 61 45.9
QL02p049624 Quercus lobata HOM05D000260 ORTHO05D000318 1.3e-07 59.7 46 47.8
Gohir.A12G054600 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.3e-07 58.9 74 41.9
CiPaw.03G063700 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.9e-07 58.5 45 55.6
QL02p050809 Quercus lobata HOM05D000072 ORTHO05D000026 2.9e-07 58.5 46 45.7
Actinidia17644 Actinidia chinensis HOM05D000260 ORTHO05D000318 3.9e-07 58.2 43 53.5
Dinv33960 Davidia involucrata HOM05D000260 ORTHO05D000318 3.9e-07 58.2 46 56.5
Gohir.D11G171500 Gossypium hirsutum HOM05D000260 ORTHO05D000318 6.6e-07 57.4 75 41.3
CsaV3_2G033790 Cucumis sativus L. HOM05D000260 ORTHO05D000318 8.6e-07 57.0 44 47.7
Oeu036849.1 Olea europaea HOM05D000260 ORTHO05D000318 1.1e-06 56.6 82 39.0
Rhsim10G0069600 Rhododendron simsii HOM05D000260 ORTHO05D000318 1.1e-06 56.6 46 45.7
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 1.1e-06 56.6 43 46.5
Actinidia17645 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.5e-06 56.2 43 53.5
CANSAT78G1831 Cannabis sativa HOM05D000260 ORTHO05D000318 1.5e-06 56.2 45 46.7
CAN.G625.38 Capsicum annuum HOM05D000072 ORTHO05D000026 1.5e-06 56.2 43 48.8
Gohir.D11G171350 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.5e-06 56.2 61 42.6
Gohir.D11G171600 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.5e-06 56.2 61 42.6
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 1.9e-06 55.8 41 61.0
SGA_v2.0_scaffold202G41465 Striga asiatica HOM05D000260 ORTHO05D000318 1.9e-06 55.8 79 40.5
Medtr7g082533 Medicago truncatula HOM05D000260 ORTHO05D000318 2.5e-06 55.5 43 46.5
Solyc02g086270.4 Solanum lycopersicum HOM05D000260 ORTHO05D000318 2.5e-06 55.5 46 47.8
FvH4_2g12540 Fragaria vesca HOM05D000260 ORTHO05D000318 3.3e-06 55.1 61 41.0
Lalb_Chr14g0371011 Lupinus albus HOM05D000260 ORTHO05D000318 3.3e-06 55.1 46 43.5
Nitab4.5_0003652g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 3.3e-06 55.1 46 45.7
QL02p050590 Quercus lobata HOM05D000260 ORTHO05D000318 3.3e-06 55.1 43 48.8
Solyc02g086210.4 Solanum lycopersicum HOM05D000072 ORTHO05D000318 3.3e-06 55.1 53 41.5
GSVIVG01030995001 Vitis vinifera HOM05D000072 ORTHO05D000026 3.3e-06 55.1 42 50.0
arahy.Tifrunner.gnm1.ann1.JH9VB6 Arachis hypogaea HOM05D000260 ORTHO05D000318 4.3e-06 54.7 82 34.1
arahy.Tifrunner.gnm1.ann1.Y6H081 Arachis hypogaea HOM05D000260 ORTHO05D000318 4.3e-06 54.7 82 34.1
Cfa023331 Carpinus fangiana HOM05D000260 ORTHO05D000318 4.3e-06 54.7 45 51.1
Gohir.A01G052200 Gossypium hirsutum HOM05D000072 ORTHO05D000026 4.3e-06 54.7 44 50.0
Gorai.007G182600 Gossypium raimondii HOM05D000260 ORTHO05D000318 4.3e-06 54.7 44 52.3
Gorai.007G184000 Gossypium raimondii HOM05D000260 ORTHO05D000318 4.3e-06 54.7 44 52.3
Hma1.2p1_0075F.1_g039260 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 4.3e-06 54.7 42 50.0
Hma1.2p1_0976F.1_g243296 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 4.3e-06 54.7 42 50.0
Sopen02g030960 Solanum pennellii HOM05D000260 ORTHO05D000318 4.3e-06 54.7 53 41.5
Eucgr.F02102 Eucalyptus grandis HOM05D000260 ORTHO05D000318 5.6e-06 54.3 43 48.8
Nitab4.5_0007990g0030 Nicotiana tabacum HOM05D000072 ORTHO05D000026 5.6e-06 54.3 46 45.7
Prupe.3G145800 Prunus persica HOM05D000072 ORTHO05D000026 5.6e-06 54.3 45 46.7
QL10p047718 Quercus lobata HOM05D000072 ORTHO05D000026 5.6e-06 54.3 43 48.8
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 5.6e-06 54.3 44 47.7
Ca_08086_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 7.3e-06 53.9 50 46.0
Oeu036851.1 Olea europaea HOM05D000260 ORTHO05D000318 7.3e-06 53.9 65 44.6
QL12p016308 Quercus lobata HOM05D000072 ORTHO05D000026 7.3e-06 53.9 43 46.5
RcHm_v2.0_Chr6g0264401 Rosa chinensis HOM05D000260 ORTHO05D000318 7.3e-06 53.9 44 47.7
Sopen02g030890 Solanum pennellii HOM05D000072 ORTHO05D000026 7.3e-06 53.9 53 39.6
Duzib138G1150 Durio zibethinus HOM05D000072 ORTHO05D000026 9.5e-06 53.5 42 54.8
Gohir.D01G041600 Gossypium hirsutum HOM05D000072 ORTHO05D000026 9.5e-06 53.5 44 47.7
Gorai.002G052200 Gossypium raimondii HOM05D000072 ORTHO05D000026 9.5e-06 53.5 44 47.7
TPR.G24821 Trifolium pratense HOM05D000072 ORTHO05D000026 9.5e-06 53.5 47 46.8


User provided reference genes

Program Settings