Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.0e-155 552.4 280 100.0
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 5.2e-135 484.6 286 87.8
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 9.9e-118 427.2 379 65.7
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.5e-107 392.1 248 79.4
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 9.6e-105 384.0 265 75.1
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 2.8e-104 382.5 290 69.7
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 4.0e-103 378.6 248 78.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.3e-103 378.3 248 77.8
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.0e-101 374.0 227 82.4
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 1.1e-100 370.5 231 80.5
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.4e-100 370.2 289 68.9
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.9e-100 369.8 231 80.5
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 3.2e-100 369.0 227 81.9
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 3.2e-100 369.0 236 79.2
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 3.2e-100 369.0 231 80.1
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 7.1e-100 367.9 241 77.6
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.6e-99 366.7 244 75.8
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 2.1e-99 366.3 286 68.5
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 3.5e-99 365.5 257 73.9
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 1.3e-98 363.6 236 79.2
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.3e-98 363.6 227 80.6
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.3e-98 363.6 221 81.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.3e-98 363.6 280 68.9
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.8e-98 363.2 233 78.5
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 5.1e-98 361.7 280 69.6
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 5.1e-98 361.7 222 80.2
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.1e-98 361.7 219 84.0
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.1e-97 360.5 239 77.8
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 1.5e-97 360.1 247 75.3
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.5e-97 359.4 239 77.8
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 4.3e-97 358.6 222 79.7
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 4.3e-97 358.6 228 79.4
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.3e-96 357.1 292 66.4
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.3e-96 357.1 225 79.1
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 2.2e-96 356.3 272 69.9
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.8e-96 355.9 236 75.0
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 3.7e-96 355.5 286 66.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.1e-95 354.0 227 79.7
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.4e-95 353.6 226 80.1
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 1.4e-95 353.6 254 71.7
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.8e-95 353.2 263 67.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 3.1e-95 352.4 246 73.6
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 4.1e-95 352.1 229 78.2
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 5.3e-95 351.7 229 76.9
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 9.0e-95 350.9 227 78.9
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.2e-94 350.5 272 68.8
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.0e-94 349.7 229 76.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.0e-94 349.7 229 76.4
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.0e-94 349.7 235 75.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 3.4e-94 349.0 214 80.8
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 4.5e-94 348.6 229 78.2
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 4.5e-94 348.6 228 75.9
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 7.7e-94 347.8 227 77.1
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 7.7e-94 347.8 264 67.8
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.7e-93 346.7 287 65.5
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 2.2e-93 346.3 251 72.9
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 2.9e-93 345.9 214 81.3
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.9e-93 345.9 214 81.3
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 3.8e-93 345.5 226 76.1
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 3.8e-93 345.5 229 78.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 6.5e-93 344.7 221 77.4
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 6.5e-93 344.7 260 70.8
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.1e-92 344.0 251 70.5
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 282 64.9
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.4e-92 343.6 252 72.2
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.4e-92 343.6 287 65.5
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.4e-92 343.6 224 79.0
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.4e-92 343.6 251 71.3
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.5e-92 342.8 214 80.8
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-91 340.1 213 80.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.6e-91 339.0 217 80.2
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 7.9e-91 337.8 246 71.1
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 1.0e-90 337.4 221 76.0
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.0e-89 333.2 231 74.0
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.5e-89 332.8 226 76.1
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 4.3e-89 332.0 215 74.0
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 7.4e-89 331.3 214 78.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.7e-88 328.9 242 70.7
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 4.8e-88 328.6 254 69.3
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 4.8e-88 328.6 254 69.3
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 1.8e-87 326.6 209 74.6
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 4.1e-87 325.5 230 72.2
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.1e-84 317.4 238 67.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.1e-84 317.4 213 77.9
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 3.2e-84 315.8 250 67.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.2e-84 315.5 218 74.3
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.0e-82 310.8 169 89.3
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.8e-82 310.1 185 78.4
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 3.3e-81 305.8 206 74.3
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 9.7e-81 304.3 180 82.8
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.2e-80 303.1 236 69.5
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 6.3e-80 301.6 226 69.0
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 5.3e-79 298.5 240 65.8
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 4.5e-78 295.4 256 62.9
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.1e-76 290.8 213 67.1
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 7.2e-76 288.1 210 69.0
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 6.7e-74 281.6 189 74.6
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 8.8e-74 281.2 224 67.0
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 2.0e-73 280.0 169 82.2
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 6.3e-72 275.0 188 71.8
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.0e-71 271.6 172 79.1
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.6e-70 269.6 208 67.8
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 8.5e-69 264.6 245 60.8
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 5.7e-65 251.9 208 59.6
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.6e-62 243.8 279 52.0
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.0e-61 241.1 209 63.6
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.7e-56 223.8 121 86.8
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.3e-50 203.4 109 89.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 3.2e-47 193.0 224 52.7
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 2.7e-46 189.9 198 49.0
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.3e-44 183.0 205 47.8
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 1.6e-43 180.6 158 63.3
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.8e-42 177.2 120 75.0
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 1.3e-40 171.0 199 47.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 8.3e-40 168.3 97 84.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 5.4e-39 165.6 97 83.5
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 9.5e-36 154.8 278 40.3
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 8.1e-35 151.8 154 57.8
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 8.3e-32 141.7 80 85.0
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.9e-31 140.6 183 48.6
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.4e-31 140.2 78 84.6
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.7e-29 134.0 129 58.1
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-28 131.3 78 82.1
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.1e-19 100.5 71 66.2
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 8.1e-19 98.6 79 69.6
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.4e-18 97.8 160 46.2
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 4.9e-16 89.4 57 71.9
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.2e-14 84.7 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 1.6e-14 84.3 51 80.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 3.5e-14 83.2 47 80.9
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.9e-13 79.7 55 69.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.1e-12 78.2 48 72.9
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.9e-08 63.5 47 63.8
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 1.6e-06 57.8 50 64.0


User provided reference genes

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