Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.4e-179 632.1 324 100.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 6.5e-137 491.1 325 80.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.3e-134 482.6 325 78.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.7e-111 405.2 261 83.5
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 8.3e-100 367.9 317 65.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 5.4e-99 365.2 319 67.4
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 3.6e-95 352.4 306 66.7
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 8.0e-95 351.3 320 64.4
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.3e-94 349.7 307 65.1
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.8e-94 348.2 320 66.2
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.0e-93 346.7 321 67.0
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.4e-93 345.9 312 64.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 9.2e-91 337.8 318 62.6
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.7e-89 333.6 254 74.4
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.5e-88 330.5 317 64.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.5e-88 330.5 322 62.1
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 4.3e-88 328.9 318 60.7
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 9.5e-88 327.8 343 60.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.8e-87 326.2 312 61.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-86 323.9 315 61.6
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 4.0e-86 322.4 252 72.6
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.0e-86 322.4 313 60.7
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.4e-85 318.9 317 62.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 4.4e-85 318.9 313 60.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.4e-85 318.9 315 59.7
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.8e-85 318.5 316 60.1
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 7.5e-85 318.2 256 73.8
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 9.8e-85 317.8 310 62.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.3e-84 317.4 321 62.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.7e-84 317.0 315 59.4
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-84 316.2 321 61.1
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-84 316.2 321 61.1
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.7e-84 315.8 313 60.7
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.9e-84 315.5 313 61.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.4e-84 315.1 310 60.6
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.4e-83 313.9 268 68.7
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.4e-83 313.9 313 61.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.4e-83 313.2 322 59.0
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.4e-83 312.0 311 63.3
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.0e-83 311.6 315 60.6
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 7.8e-82 308.1 322 58.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 7.8e-82 308.1 295 62.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.0e-81 307.8 320 61.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.7e-81 307.0 320 60.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 6.6e-81 305.1 319 60.2
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.5e-80 303.1 330 59.7
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.1e-78 297.7 324 56.8
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.4e-78 297.4 303 61.4
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.8e-78 297.0 298 60.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.1e-78 296.2 335 54.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 8.9e-78 294.7 316 59.8
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.8e-77 292.0 297 58.2
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 5.8e-77 292.0 284 63.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 8.3e-76 288.1 302 60.3
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-75 287.7 273 65.9
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.1e-75 285.8 308 57.5
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 7.1e-75 285.0 319 55.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.1e-75 285.0 310 57.1
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 9.2e-75 284.6 314 57.0
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.8e-74 281.6 308 57.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 7.8e-74 281.6 243 66.3
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 1.0e-73 281.2 307 57.3
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.7e-73 280.4 327 54.7
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 8.6e-73 278.1 321 54.2
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.9e-72 276.9 277 61.7
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.9e-72 276.9 308 57.5
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.5e-72 276.6 308 57.5
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.3e-72 276.2 310 54.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 4.3e-72 275.8 305 56.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 7.3e-72 275.0 311 55.3
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.6e-71 273.9 326 56.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.8e-71 273.1 315 56.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.1e-70 271.2 338 50.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-70 270.8 325 52.0
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.0e-70 269.2 306 54.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.2e-69 267.7 331 50.5
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.5e-69 267.3 322 55.6
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.0e-69 266.9 237 66.2
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.6e-69 266.5 231 67.1
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.4e-69 266.2 361 51.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.2e-68 263.5 260 59.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.7e-68 262.7 333 55.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 8.3e-68 261.5 237 63.7
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.4e-67 260.0 330 49.4
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.6e-66 257.3 315 54.3
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.1e-66 256.9 311 50.8
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.3e-65 254.2 342 48.8
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.9e-65 252.7 318 51.6
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 3.3e-64 249.6 304 53.3
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.6e-64 248.8 184 73.4
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 4.7e-63 245.7 245 64.1
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.4e-62 244.2 303 51.8
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.4e-62 244.2 333 49.5
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.4e-62 244.2 318 51.9
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.8e-62 243.8 339 49.3
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 5.2e-62 242.3 330 48.5
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 5.8e-61 238.8 298 52.7
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 6.4e-60 235.3 298 52.3
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.1e-59 234.6 247 62.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 8.1e-55 218.4 303 50.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 6.9e-54 215.3 268 52.2
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 9.0e-54 214.9 301 49.5
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.4e-53 213.0 256 52.7
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.9e-52 209.9 327 47.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.1e-51 208.0 313 48.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.4e-51 207.6 351 45.6
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.9e-51 207.2 304 48.7
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.4e-51 206.8 248 55.2
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.2e-51 206.1 243 52.3
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.2e-51 206.1 312 44.2
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 7.1e-51 205.3 312 43.9
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.7e-50 203.4 322 45.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 6.0e-50 202.2 303 49.2
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.0e-49 201.4 345 45.8
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-49 200.3 249 55.8
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.0e-49 199.9 254 53.5
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.9e-49 199.5 254 55.1
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.9e-49 199.5 248 54.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 6.6e-49 198.7 264 49.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-48 197.6 329 45.3
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-48 197.6 267 51.3
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-48 197.6 267 51.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 3.3e-48 196.4 336 44.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 7.3e-48 195.3 335 44.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-47 194.5 322 46.0
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.6e-47 194.1 295 45.1
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-47 193.7 338 44.7
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.1e-47 193.7 318 47.2
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.1e-47 193.7 198 61.1
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.8e-47 193.4 313 46.6
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.6e-47 193.0 327 45.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-47 192.6 330 47.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 4.8e-47 192.6 330 47.0
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 6.2e-47 192.2 345 44.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.2e-47 192.2 218 54.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-46 191.4 338 44.4
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 5.3e-46 189.1 331 45.6
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-44 184.5 332 45.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.4e-43 181.0 346 44.8
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.4e-43 180.3 304 45.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.4e-43 180.3 296 44.9
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.8e-41 174.1 301 42.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 7.4e-40 168.7 323 42.1
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 9.6e-40 168.3 300 43.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-39 166.8 209 51.2
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 5.8e-37 159.1 241 45.6
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.0e-36 158.3 198 47.0
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.8e-33 147.5 116 69.0
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.3e-33 147.1 113 72.6
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 8.7e-33 145.2 299 39.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-32 144.8 299 39.8
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-32 144.1 299 39.5
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 3.3e-32 143.3 299 39.5
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.3e-32 143.3 284 40.1
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.3e-32 143.3 284 40.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 3.1e-30 136.7 297 37.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.3e-25 120.6 318 36.5
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.8e-23 113.6 172 45.9
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.1e-22 111.7 155 46.5
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 5.9e-21 105.9 237 38.0
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.2e-15 87.4 62 77.4
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.7e-15 86.7 71 64.8
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 5.3e-06 56.2 299 27.8


User provided reference genes

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