Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 0.0e+00 1376.7 688 100.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 0.0e+00 1211.8 698 87.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.6e-286 989.2 687 70.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 9.8e-268 926.8 686 65.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.6e-265 919.5 702 64.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.6e-265 919.5 688 65.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.5e-263 912.9 686 65.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.6e-263 911.0 688 66.1
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 9.5e-263 910.2 682 64.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.1e-261 906.7 682 64.8
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.0e-261 904.8 690 63.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.4e-258 895.6 682 64.5
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.4e-258 894.4 682 63.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.3e-256 889.8 658 66.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 4.7e-254 881.3 691 63.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.8e-253 879.4 687 62.7
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.4e-252 874.8 640 65.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 9.9e-252 873.6 696 63.2
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 6.4e-251 870.9 692 62.3
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.1e-249 865.9 690 62.5
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.9e-248 861.7 690 62.8
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.5e-244 849.7 695 61.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.6e-244 849.0 702 60.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.3e-243 846.7 686 60.9
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 7.8e-241 837.4 690 60.9
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.2e-238 830.1 682 59.7
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 9.9e-236 820.5 692 58.7
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-235 819.7 685 59.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.5e-233 812.0 696 59.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 7.6e-228 794.3 698 58.9
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-227 793.1 690 59.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.1e-226 790.4 699 58.7
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-226 790.4 731 55.1
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 9.3e-226 787.3 691 58.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.2e-225 786.9 700 55.9
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.6e-222 776.5 695 56.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-221 772.7 692 58.4
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.0e-220 769.6 700 55.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 3.8e-219 765.4 687 54.9
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.4e-218 763.5 688 55.4
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.4e-218 763.5 723 55.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.1e-217 759.6 688 55.7
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.5e-217 758.8 841 49.9
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 6.0e-217 758.1 694 55.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 4.3e-215 751.9 687 55.5
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 7.4e-215 751.1 691 54.4
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.7e-214 748.8 696 54.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 6.2e-214 748.0 690 54.9
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.4e-213 746.9 701 54.1
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 3.1e-213 745.7 689 52.7
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.2e-212 743.8 691 55.1
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.2e-212 743.8 693 54.3
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 2.6e-212 742.7 709 52.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 4.9e-211 738.4 700 53.9
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.4e-210 736.9 695 53.7
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.2e-210 735.7 704 53.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 5.5e-210 734.9 700 53.6
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 9.3e-210 734.2 696 53.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.5e-207 726.1 706 53.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.7e-207 724.9 717 52.9
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 9.7e-207 724.2 691 54.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 6.3e-206 721.5 757 50.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.8e-205 719.9 703 52.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.3e-205 718.4 705 52.3
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.5e-204 716.8 698 52.6
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.0e-204 716.5 689 54.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.4e-204 715.7 725 51.2
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 5.0e-203 711.8 689 53.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 9.4e-202 707.6 704 52.4
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 9.4e-202 707.6 641 56.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 2.3e-200 703.0 685 51.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 6.7e-200 701.4 706 51.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 9.7e-199 697.6 690 52.5
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-197 694.1 698 52.1
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.3e-195 687.2 651 53.6
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.8e-190 669.5 691 50.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.5e-186 656.4 597 53.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 5.7e-183 645.2 709 49.2
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 4.8e-182 642.1 656 51.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.9e-180 635.2 701 48.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.3e-179 634.0 694 47.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 6.7e-176 621.7 746 46.4
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.7e-175 618.6 737 46.1
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.4e-173 614.0 688 46.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.2e-159 567.8 429 65.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 5.6e-154 548.9 683 44.8
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 6.8e-152 542.0 450 58.4
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.3e-150 537.7 582 51.0
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.0e-149 531.9 684 42.1
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.3e-144 516.9 575 47.7
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 7.5e-143 511.9 450 58.0
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.9e-139 499.6 473 53.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.6e-137 493.0 375 63.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 4.0e-136 489.6 638 42.3
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 7.3e-122 442.2 332 65.4
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.2e-119 434.9 659 37.6
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 7.9e-108 395.6 618 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.9e-104 382.5 540 39.6
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 8.7e-91 339.0 257 61.9
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 5.7e-90 336.3 317 53.9
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-82 311.6 350 45.4
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.5e-82 310.8 264 57.6
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 4.7e-76 290.0 274 56.6
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-66 256.9 206 62.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 2.8e-65 254.2 292 46.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 6.1e-60 236.5 196 62.2
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 6.8e-59 233.0 250 46.0
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 2.0e-58 231.5 263 45.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.6e-58 231.1 216 50.5
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.0e-54 216.9 335 38.5
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.0e-54 216.9 510 31.4
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.8e-48 198.4 160 56.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 9.1e-48 196.1 156 64.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.3e-46 192.2 233 43.8
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.1e-37 162.5 168 48.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-37 161.4 304 32.9
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-34 152.1 283 33.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.4e-34 150.6 321 32.1
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.8e-34 149.4 184 42.9
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 1.7e-33 148.7 130 58.5
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.7e-31 141.4 474 27.2
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-29 134.8 194 38.1
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 6.2e-28 130.2 87 69.0
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-27 127.9 209 35.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-27 127.1 320 30.9
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.2e-26 125.9 148 48.0
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.2e-26 125.9 437 25.2
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-26 124.8 272 32.4
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.2e-24 117.9 143 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.4e-24 117.1 419 26.3
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.4e-24 117.1 87 63.2
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-23 115.2 87 63.2
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-23 114.8 87 63.2
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-22 112.8 155 40.6
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.7e-22 112.1 103 60.2
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-21 107.8 87 60.9
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-21 107.1 210 33.3
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.6e-18 98.2 136 44.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.4e-18 97.8 244 30.3
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.6e-18 96.7 136 39.0
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.3e-17 95.9 84 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.7e-17 94.4 128 38.3
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.9e-17 94.0 63 65.1
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 9.2e-16 89.7 76 55.3
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 2.7e-15 88.2 137 42.3
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 4.6e-15 87.4 61 72.1
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.8e-15 86.7 87 52.9
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 2.3e-14 85.1 106 47.2
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-13 81.3 103 42.7
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 5.6e-13 80.5 93 47.3
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.4e-11 75.1 58 65.5
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 8.9e-11 73.2 50 64.0
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-10 71.6 170 29.4
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-08 65.5 48 60.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 5.4e-08 63.9 45 62.2
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.1e-08 63.5 44 63.6
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.7e-06 58.9 34 67.6
HanXRQChr16g0529121 Helianthus annuus HOM05D001714 ORTHO05D001932 3.9e-06 57.8 148 31.8


User provided reference genes

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