Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.1e-20 101.3 48 100.0
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 3.8e-17 90.5 48 89.6
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.5e-15 84.0 40 92.5
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.5e-15 84.0 40 92.5
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 3.5e-15 84.0 40 92.5
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 7.9e-15 82.8 44 84.1
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.8e-14 81.6 45 77.8
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.3e-14 81.3 45 82.2
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 3.0e-14 80.9 45 80.0
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 6.7e-14 79.7 45 80.0
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 6.7e-14 79.7 45 80.0
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 1.1e-13 79.0 45 80.0
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 1.5e-13 78.6 45 77.8
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 1.9e-13 78.2 45 77.8
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 9.6e-13 75.9 47 70.2
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 2.1e-12 74.7 45 71.1
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 4.8e-12 73.6 57 64.9
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 6.2e-12 73.2 48 66.7
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 8.1e-12 72.8 48 70.8
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 8.1e-12 72.8 47 74.5
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.1e-11 72.4 48 68.8
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 1.1e-11 72.4 48 72.9
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 1.1e-11 72.4 48 72.9
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 1.4e-11 72.0 38 81.6
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.4e-11 72.0 48 66.7
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 1.8e-11 71.6 44 75.0
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 1.8e-11 71.6 46 69.6
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.4e-11 71.2 48 66.7
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.1e-11 70.9 42 78.6
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 6.9e-11 69.7 48 64.6
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 9.0e-11 69.3 36 83.3
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 9.0e-11 69.3 36 83.3
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 9.0e-11 69.3 36 83.3
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 9.0e-11 69.3 45 68.9
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 1.2e-10 68.9 46 69.6
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 1.2e-10 68.9 46 69.6
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 1.2e-10 68.9 45 68.9
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 1.5e-10 68.6 45 66.7
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 1.5e-10 68.6 48 64.6
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 2.6e-10 67.8 45 66.7
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.6e-10 67.8 48 66.7
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 3.4e-10 67.4 41 75.6
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 3.4e-10 67.4 41 75.6
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.4e-10 67.4 48 66.7
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 3.4e-10 67.4 44 68.2
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 4.5e-10 67.0 45 66.7
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 4.5e-10 67.0 45 68.9
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 4.5e-10 67.0 49 67.3
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.8e-10 66.6 45 64.4
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.8e-10 66.6 45 64.4
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 7.6e-10 66.2 41 73.2
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 7.6e-10 66.2 41 73.2
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 7.6e-10 66.2 46 67.4
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 7.6e-10 66.2 45 64.4
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 7.6e-10 66.2 49 65.3
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.0e-09 65.9 46 65.2
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.0e-09 65.9 46 65.2
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 1.0e-09 65.9 48 60.4
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 1.0e-09 65.9 48 60.4
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 1.0e-09 65.9 45 64.4
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.0e-09 65.9 45 64.4
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 1.3e-09 65.5 41 73.2
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 1.3e-09 65.5 40 70.0
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 1.3e-09 65.5 45 64.4
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.3e-09 65.5 45 64.4
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.3e-09 65.5 50 64.0
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 1.7e-09 65.1 49 63.3
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 2.9e-09 64.3 39 66.7
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 3.8e-09 63.9 48 58.3
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 3.8e-09 63.9 48 58.3
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 3.8e-09 63.9 37 73.0
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 3.8e-09 63.9 51 62.7
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 6.5e-09 63.2 44 68.2
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 6.5e-09 63.2 44 68.2
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 6.5e-09 63.2 44 68.2
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 6.5e-09 63.2 49 61.2
CiPaw.15G127400 Carya illinoinensis HOM05D004326 ORTHO05D004570 8.4e-09 62.8 45 53.3
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 8.4e-09 62.8 44 56.8
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 8.4e-09 62.8 50 58.0
Manes.05G139100 Manihot esculenta HOM05D004326 ORTHO05D004570 1.1e-08 62.4 46 58.7
ClCG05G012040 Citrullus lanatus HOM05D004326 ORTHO05D004570 1.4e-08 62.0 50 64.0
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 1.4e-08 62.0 45 64.4
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.9e-08 61.6 44 59.1
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.9e-08 61.6 44 59.1
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 1.9e-08 61.6 46 58.7
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 1.9e-08 61.6 44 59.1
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 1.9e-08 61.6 38 68.4
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 1.9e-08 61.6 51 58.8
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 1.9e-08 61.6 38 68.4
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 1.9e-08 61.6 51 60.8
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 1.9e-08 61.6 51 60.8
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 1.9e-08 61.6 48 62.5
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.9e-08 61.6 45 57.8
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 2.5e-08 61.2 48 60.4
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 2.5e-08 61.2 48 60.4
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 2.5e-08 61.2 48 60.4
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 2.5e-08 61.2 50 60.0
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 3.2e-08 60.8 48 60.4
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 3.2e-08 60.8 46 65.2
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.2e-08 60.8 36 75.0
THA.LOC109117025 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.2e-08 60.8 45 55.6
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 4.2e-08 60.5 47 66.0
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 4.2e-08 60.5 44 59.1
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 4.2e-08 60.5 46 65.2
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 4.2e-08 60.5 47 61.7
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 4.2e-08 60.5 36 75.0
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 5.5e-08 60.1 40 62.5
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 5.5e-08 60.1 46 60.9
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 5.5e-08 60.1 40 62.5
C08p16040 Brassica napus HOM05D004326 ORTHO05D004570 5.5e-08 60.1 46 58.7
Prupe.5G217900 Prunus persica HOM05D004326 ORTHO05D004570 7.1e-08 59.7 49 55.1
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 9.3e-08 59.3 47 63.8
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.2e-07 58.9 46 58.7
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 1.2e-07 58.9 46 58.7
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 1.6e-07 58.5 40 62.5
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 1.6e-07 58.5 40 62.5
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 1.6e-07 58.5 40 62.5
Duzib084G0016 Durio zibethinus HOM05D004326 ORTHO05D004570 2.1e-07 58.2 48 58.3
A02p03350 Brassica napus HOM05D004326 ORTHO05D004570 2.7e-07 57.8 47 61.7
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 2.7e-07 57.8 40 62.5
BraA02t05306Z Brassica rapa HOM05D004326 ORTHO05D004570 2.7e-07 57.8 47 61.7
Duzib068G0156 Durio zibethinus HOM05D004326 ORTHO05D004570 2.7e-07 57.8 48 56.2
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 2.7e-07 57.8 49 61.2
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.7e-07 57.8 38 71.1
TWI60G1416 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.7e-07 57.8 42 64.3
ClCG03G009910 Citrullus lanatus HOM05D004326 ORTHO05D004570 3.5e-07 57.4 50 56.0
TWI81G0420 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 6.0e-07 56.6 44 59.1
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 7.9e-07 56.2 46 58.7
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.8e-06 55.1 50 54.0
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.8e-06 55.1 50 54.0
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.8e-06 55.1 50 54.0
A06p42560 Brassica napus HOM05D004326 ORTHO05D004570 2.3e-06 54.7 41 63.4
BraA06t27171Z Brassica rapa HOM05D004326 ORTHO05D004570 2.3e-06 54.7 41 63.4
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 2.3e-06 54.7 36 66.7
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.0e-06 54.3 48 54.2
AT3G25717 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.9e-06 53.9 41 61.0
A09p24960 Brassica napus HOM05D004326 ORTHO05D004570 3.9e-06 53.9 41 61.0
BraA09t38084Z Brassica rapa HOM05D004326 ORTHO05D004570 3.9e-06 53.9 41 61.0
Carub.0005s0354 Capsella rubella HOM05D004326 ORTHO05D004570 3.9e-06 53.9 41 61.0
Glyma.12G187300 Glycine max HOM05D004326 ORTHO05D004570 3.9e-06 53.9 40 65.0
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 6.7e-06 53.1 30 80.0
A03p32970 Brassica napus HOM05D004326 ORTHO05D004570 8.7e-06 52.8 36 66.7
C03p40100 Brassica napus HOM05D004326 ORTHO05D004570 8.7e-06 52.8 36 66.7
BolC3t16276H Brassica oleracea HOM05D004326 ORTHO05D004570 8.7e-06 52.8 36 66.7
BraA03t12465Z Brassica rapa HOM05D004326 ORTHO05D004570 8.7e-06 52.8 36 66.7
CARHR076480 Cardamine hirsuta HOM05D004326 ORTHO05D004570 8.7e-06 52.8 46 56.5
Manes.01G020350 Manihot esculenta HOM05D004326 ORTHO05D004570 8.7e-06 52.8 46 52.2


User provided reference genes

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