Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.3e-180 636.3 347 100.0
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 7.1e-166 587.4 347 92.5
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.8e-140 503.1 417 69.8
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.0e-139 499.6 347 80.7
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.3e-124 449.5 347 72.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 3.7e-122 442.2 351 70.4
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.1e-121 438.7 352 71.0
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.5e-118 429.5 350 69.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.2e-117 427.2 351 70.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.2e-117 427.2 352 68.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-116 423.3 351 70.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.8e-116 423.3 351 70.1
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 3.0e-116 422.5 352 70.2
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.0e-116 422.5 349 68.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 7.5e-115 417.9 349 66.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.7e-114 416.8 350 68.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.8e-114 416.0 347 68.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 6.3e-114 414.8 349 67.0
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.4e-113 413.7 350 68.3
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 4.1e-113 412.1 348 69.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 9.1e-113 411.0 347 68.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.2e-111 406.4 351 68.7
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 2.2e-111 406.4 353 65.2
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.1e-110 404.1 351 66.4
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.6e-109 400.2 348 65.8
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.1e-109 399.8 351 67.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.7e-109 399.4 353 65.7
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.6e-109 399.1 353 65.7
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 5.2e-108 395.2 353 67.1
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 5.2e-108 395.2 351 63.8
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 6.8e-108 394.8 352 65.3
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-107 393.3 352 63.1
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.4e-107 392.1 350 64.3
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.3e-106 390.6 352 62.5
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.7e-106 390.2 350 64.0
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.7e-106 390.2 350 63.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 2.2e-106 389.8 351 63.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 3.7e-106 389.0 365 64.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 9.1e-105 384.4 353 63.7
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 9.1e-105 384.4 350 63.7
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.6e-104 383.6 360 62.2
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.6e-104 383.6 350 63.1
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.6e-104 383.6 351 63.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.0e-104 383.3 353 63.2
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 7.7e-104 381.3 351 64.4
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.0e-103 380.9 353 61.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-103 380.6 350 63.7
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 2.3e-103 379.8 361 62.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.9e-103 379.4 354 63.3
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 2.9e-103 379.4 353 61.2
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.8e-103 379.0 350 63.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 5.0e-103 378.6 353 62.9
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 5.0e-103 378.6 353 62.9
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.5e-102 377.1 353 62.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-102 376.7 351 63.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.9e-102 376.7 351 63.5
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.9e-102 376.7 347 63.1
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 3.3e-102 375.9 350 62.6
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.2e-102 374.8 350 63.1
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.2e-102 374.8 350 63.1
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 7.2e-102 374.8 353 62.6
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 9.5e-102 374.4 353 63.5
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.6e-101 373.6 348 63.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.6e-101 372.5 368 60.3
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.0e-100 370.9 349 62.5
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 5.2e-100 368.6 353 61.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 3.4e-99 365.9 350 60.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.3e-98 364.0 354 60.5
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.7e-98 363.6 349 60.2
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.2e-98 363.2 350 62.3
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 6.3e-98 361.7 351 61.3
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.3e-98 361.7 352 63.1
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.3e-98 361.7 352 63.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.7e-96 356.3 349 60.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 4.5e-96 355.5 350 60.9
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.0e-95 354.4 352 59.9
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.3e-95 354.0 352 59.9
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 5.0e-95 352.1 409 56.2
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.3e-94 349.4 303 66.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.6e-94 348.6 341 61.0
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 7.3e-94 348.2 350 61.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.6e-91 339.7 348 59.8
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 2.6e-91 339.7 352 60.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 8.3e-90 334.7 350 58.6
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 7.0e-89 331.6 372 57.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 9.2e-89 331.3 340 58.8
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 2.7e-88 329.7 352 56.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.7e-88 329.7 365 55.9
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 3.5e-88 329.3 343 58.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.2e-85 320.9 356 57.0
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.1e-84 317.8 379 51.2
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 3.1e-84 316.2 337 56.7
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.6e-83 313.2 345 56.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 8.6e-79 298.1 361 53.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.2e-77 294.3 349 55.9
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 3.1e-76 289.7 350 52.9
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.3e-74 284.3 252 65.1
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.7e-66 257.3 350 50.6
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.3e-61 241.1 232 59.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.8e-60 237.3 201 65.2
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 9.0e-60 235.0 330 47.9
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.5e-59 234.2 316 50.0
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 3.2e-57 226.5 233 59.2
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 8.4e-50 201.8 194 62.4
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 7.1e-49 198.7 174 66.7
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.1e-48 197.2 229 55.0
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.5e-46 191.0 143 71.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 6.9e-44 182.2 201 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.4e-36 157.9 302 38.1
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 6.9e-36 155.6 379 35.9
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.0e-35 154.1 133 66.2
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 5.8e-35 152.5 236 44.5
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.3e-34 151.4 231 46.8
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 8.4e-34 148.7 113 69.0
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 8.4e-34 148.7 238 45.0
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.8e-31 141.0 300 39.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.8e-29 132.9 230 41.7
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 4.1e-28 129.8 96 72.9
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.3e-23 114.0 102 65.7
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 3.0e-23 113.6 316 34.5
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 3.0e-23 113.6 376 30.3
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-21 108.2 74 79.7
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.3e-21 105.9 301 35.9
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 4.1e-20 103.2 92 59.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 3.6e-16 90.1 77 68.8
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 4.7e-16 89.7 124 50.0
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 7.9e-16 89.0 239 35.1
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.7e-13 81.3 95 44.2
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 4.1e-12 76.6 85 57.6
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 7.2e-09 65.9 53 69.8
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.4e-07 61.6 139 36.0
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 2.3e-07 60.8 86 45.3
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 2.6e-06 57.4 102 45.1
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 4.4e-06 56.6 48 62.5
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 5.7e-06 56.2 121 38.0


User provided reference genes

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