Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-25 119.0 66 100.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 7.0e-22 106.7 66 87.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.9e-21 103.6 66 86.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.0e-20 100.5 66 83.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.5e-19 98.2 65 83.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.5e-19 98.2 65 81.5
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 85.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 85.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 83.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.1e-18 95.1 66 77.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 8.0e-18 93.2 63 79.4
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 8.0e-18 93.2 63 81.0
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 75.8
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.4e-17 92.4 67 76.1
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.4e-17 92.4 68 79.4
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-17 91.3 66 75.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 4.0e-17 90.9 63 76.2
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 5.2e-17 90.5 67 76.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 5.2e-17 90.5 70 74.3
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.2e-17 90.5 65 72.3
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.5e-16 89.0 70 74.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 76.2
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.6e-16 88.2 66 74.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.4e-16 87.4 67 73.1
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.4e-16 87.4 67 73.1
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.4e-16 87.4 59 79.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.7e-16 87.0 56 83.9
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 7.5e-16 86.7 66 77.3
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 7.5e-16 86.7 69 72.5
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 9.8e-16 86.3 63 73.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.7e-15 85.5 66 78.8
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 73.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 76.9
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 73.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.8e-15 84.7 66 74.2
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 3.7e-15 84.3 63 71.4
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 3.7e-15 84.3 68 76.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.7e-15 84.3 65 73.8
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.9e-15 84.0 64 73.4
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 6.3e-15 83.6 73 71.2
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 6.3e-15 83.6 73 71.2
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.4e-14 80.5 70 71.4
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 9.2e-14 79.7 67 67.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 71.4
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.6e-13 79.0 60 65.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 3.5e-13 77.8 70 65.7
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 5.9e-13 77.0 66 69.7
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.0e-12 76.3 66 71.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.3e-12 75.9 74 62.2
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.3e-12 75.9 74 62.2
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 1.3e-12 75.9 74 63.5
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.9e-12 74.3 74 59.5
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 3.9e-12 74.3 68 69.1
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 8.6e-12 73.2 74 63.5
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 8.6e-12 73.2 74 60.8
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 1.1e-11 72.8 70 62.9
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 1.1e-11 72.8 74 62.2
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.9e-11 72.0 69 65.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 4.3e-11 70.9 69 62.3
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-10 69.3 58 70.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.0e-09 66.2 61 62.3
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.1e-09 64.7 75 56.0
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 4.0e-09 64.3 41 75.6
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 8.9e-09 63.2 41 73.2
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.6e-08 61.6 41 73.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 4.4e-08 60.8 66 53.0
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 4.4e-08 60.8 41 70.7
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 5.8e-08 60.5 69 56.5
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 7.5e-08 60.1 41 68.3
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 7.5e-08 60.1 41 68.3
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.5e-08 60.1 55 61.8
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 9.8e-08 59.7 41 68.3
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-07 58.9 64 53.1
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.7e-07 58.9 56 60.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.2e-07 58.5 60 56.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.2e-07 58.5 55 61.8
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 61.1
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 61.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.9e-07 58.2 54 61.1
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.9e-07 58.2 54 61.1
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.7e-07 57.8 54 59.3
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.7e-07 57.8 60 55.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.7e-07 57.8 60 55.0
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 54 61.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.7e-07 57.8 58 56.9
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 4.9e-07 57.4 41 65.9
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 4.9e-07 57.4 41 65.9
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.9e-07 57.4 58 56.9
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.9e-07 57.4 58 56.9
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.4e-07 57.0 59 55.9
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 6.4e-07 57.0 60 58.3
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 6.4e-07 57.0 54 61.1
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.4e-07 57.0 59 55.9
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 6.4e-07 57.0 59 57.6
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 8.3e-07 56.6 41 63.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 8.3e-07 56.6 54 59.3
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 8.3e-07 56.6 57 59.6
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 61.1
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 55 58.2
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 61 55.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 61.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 61 55.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 57.4
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 61.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.9e-06 55.5 57 57.9
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.9e-06 55.5 54 57.4
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.9e-06 55.5 54 57.4
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.9e-06 55.5 55 58.2
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 2.4e-06 55.1 61 54.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 2.4e-06 55.1 55 58.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.4e-06 55.1 54 59.3
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 2.4e-06 55.1 54 59.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 2.4e-06 55.1 54 59.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.4e-06 55.1 54 59.3
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.4e-06 55.1 58 55.2
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.2e-06 54.7 60 53.3
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 3.2e-06 54.7 54 57.4
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.2e-06 54.7 54 55.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.2e-06 54.7 58 55.2
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.2e-06 54.7 54 59.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 53.3
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 56 57.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 56 57.1
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 4.1e-06 54.3 56 57.1
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 53 54.7
MELO3C023781.2 Cucumis melo HOM05D001568 ORTHO05D004404 7.0e-06 53.5 35 74.3
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.0e-06 53.5 56 55.4
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 7.0e-06 53.5 59 55.9
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.0e-06 53.5 55 56.4
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 9.2e-06 53.1 61 52.5


User provided reference genes

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