Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.7e-144 516.2 299 100.0
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 9.6e-111 404.1 303 79.5
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 7.1e-106 387.9 299 78.3
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 2.7e-65 253.1 174 78.2
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.3e-62 244.2 165 77.0
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.3e-62 244.2 320 51.6
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 2.2e-62 243.4 350 45.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 2.2e-62 243.4 254 61.8
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 6.3e-62 241.9 306 52.0
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.8e-61 240.4 317 54.3
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.7e-60 236.5 151 79.5
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 3.5e-60 236.1 164 74.4
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 3.5e-60 236.1 184 67.9
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.7e-59 233.8 318 53.8
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 1.1e-58 231.1 335 46.3
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.1e-58 231.1 176 71.0
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.9e-58 230.3 175 68.6
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 3.2e-58 229.6 189 63.5
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 4.2e-58 229.2 183 65.6
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 5.5e-58 228.8 295 51.2
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 9.4e-58 228.0 298 50.7
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.1e-57 226.9 206 62.1
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 2.7e-57 226.5 183 64.5
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 2.7e-57 226.5 183 65.6
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 4.7e-57 225.7 282 51.1
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 6.1e-57 225.3 153 75.8
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.1e-57 225.3 210 59.5
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.4e-56 224.2 181 68.0
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 2.3e-56 223.4 151 74.8
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 5.2e-56 222.2 210 59.0
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 5.2e-56 222.2 152 75.7
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.4e-55 219.2 295 47.5
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 5.7e-55 218.8 203 59.1
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 5.7e-55 218.8 295 47.1
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 7.5e-55 218.4 332 50.6
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 9.8e-55 218.0 225 56.0
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 9.8e-55 218.0 298 49.7
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.3e-54 217.6 166 68.1
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 2.2e-54 216.9 171 67.3
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 2.2e-54 216.9 172 65.1
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 2.2e-54 216.9 252 54.4
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 3.7e-54 216.1 302 48.7
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 4.8e-54 215.7 252 54.0
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 4.8e-54 215.7 291 46.7
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 8.3e-54 214.9 301 53.2
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.1e-53 214.5 292 48.3
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 1.1e-53 214.5 202 63.4
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.4e-53 214.2 302 45.4
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.4e-53 213.4 349 42.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 5.4e-53 212.2 290 49.3
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 9.1e-53 211.5 300 50.0
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 9.1e-53 211.5 162 67.9
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 9.1e-53 211.5 331 45.6
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 9.1e-53 211.5 309 46.3
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.6e-52 210.7 165 66.7
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.6e-52 210.7 303 46.2
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.6e-52 210.7 144 73.6
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 2.0e-52 210.3 307 49.8
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-52 210.3 159 69.8
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.7e-52 209.9 303 49.2
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 3.5e-52 209.5 134 79.1
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 2.3e-51 206.8 296 49.3
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.3e-51 206.8 329 52.0
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 2.3e-51 206.8 145 72.4
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 3.8e-51 206.1 176 63.1
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.1e-50 204.5 146 70.5
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.1e-50 204.5 146 70.5
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.1e-50 204.5 146 70.5
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.1e-50 204.5 146 70.5
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 1.9e-50 203.8 140 73.6
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 4.2e-50 202.6 146 69.9
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 7.2e-50 201.8 134 75.4
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 7.2e-50 201.8 154 66.9
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.5e-50 201.4 142 73.2
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.6e-49 200.7 310 44.2
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.1e-49 200.3 305 45.9
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.8e-48 197.2 145 69.0
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.3e-48 196.8 300 46.0
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 3.0e-48 196.4 183 59.0
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 4.0e-48 196.1 146 70.5
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 5.2e-48 195.7 210 53.8
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 5.2e-48 195.7 156 64.7
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 6.8e-48 195.3 191 57.1
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 1.5e-47 194.1 174 60.9
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.0e-47 193.7 296 45.3
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.0e-47 193.7 296 45.3
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.6e-47 193.4 132 74.2
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 9.8e-47 191.4 187 56.7
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 9.8e-47 191.4 345 41.4
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.7e-46 190.7 279 44.8
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.7e-46 190.7 302 46.7
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.2e-46 190.3 292 46.2
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.8e-46 189.9 148 68.9
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.8e-46 189.9 148 68.9
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 3.7e-46 189.5 177 61.6
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 3.7e-46 189.5 177 61.6
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 8.3e-46 188.3 168 60.1
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.1e-45 188.0 146 65.1
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.8e-45 187.2 146 68.5
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 4.1e-45 186.0 301 46.8
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 5.4e-45 185.7 338 42.6
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 9.2e-45 184.9 297 42.1
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 9.2e-45 184.9 174 58.0
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 7.8e-44 181.8 316 39.6
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 7.8e-44 181.8 298 46.6
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.0e-43 181.4 364 40.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 1.7e-43 180.6 181 56.4
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.3e-43 180.3 228 47.4
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.9e-43 179.5 319 47.0
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 5.0e-43 179.1 323 42.4
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 6.6e-43 178.7 298 45.3
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 6.6e-43 178.7 309 42.1
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 8.6e-43 178.3 214 50.5
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 3.3e-42 176.4 315 40.0
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 4.3e-42 176.0 183 56.8
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.6e-41 174.1 206 49.5
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 4.0e-40 169.5 136 66.9
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 4.0e-40 169.5 278 42.8
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 5.2e-40 169.1 283 42.0
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.2e-40 169.1 146 63.0
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.8e-39 165.6 134 62.7
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 1.7e-38 164.1 176 54.5
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 3.7e-38 162.9 132 66.7
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 1.1e-37 161.4 132 62.9
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-37 160.6 146 63.7
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 1.9e-37 160.6 165 56.4
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.5e-31 141.0 146 56.2
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.1e-29 134.8 119 61.3
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 5.4e-29 132.5 100 70.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 3.5e-28 129.8 150 50.7
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 4.6e-28 129.4 138 49.3
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 9.5e-26 121.7 164 44.5
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 6.2e-25 119.0 132 47.0
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 4.9e-22 109.4 89 62.9
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.2e-20 104.8 136 47.8
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 4.3e-18 96.3 117 46.2
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 1.1e-16 91.7 83 63.9
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 8.9e-16 88.6 135 40.7
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-15 88.2 100 54.0
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 4.4e-15 86.3 76 59.2
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 9.9e-15 85.1 108 45.4
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 3.9e-11 73.2 57 64.9
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 7.3e-10 68.9 170 30.6
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 7.3e-10 68.9 142 36.6
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 8.4e-06 55.5 146 29.5


User provided reference genes

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