Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.0e-20 101.3 68 100.0
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.0e-20 101.3 68 100.0
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.4e-19 97.8 68 92.6
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 3.5e-16 87.8 68 86.8
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.9e-14 82.0 68 83.8
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 1.2e-13 79.3 68 63.2
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 1.2e-13 79.3 68 63.2
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.6e-13 79.0 68 79.4
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 2.1e-13 78.6 68 63.2
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.7e-13 78.2 68 75.0
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 2.7e-13 78.2 68 63.2
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 3.6e-13 77.8 68 61.8
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 6.1e-13 77.0 66 60.6
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.0e-12 76.3 69 73.9
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.0e-12 76.3 68 61.8
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.0e-12 76.3 68 60.3
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.4e-12 75.9 92 58.7
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.8e-12 75.5 65 63.1
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.8e-12 75.5 65 63.1
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 60.3
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.2e-12 73.9 68 55.9
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 5.2e-12 73.9 68 58.8
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 8.8e-12 73.2 68 73.5
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 64.6
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.2e-11 72.8 68 76.5
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 1.2e-11 72.8 68 75.0
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 2.0e-11 72.0 64 57.8
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-11 72.0 68 67.6
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 2.6e-11 71.6 67 58.2
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 2.6e-11 71.6 66 71.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 69.1
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 66.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 64.7
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 3.4e-11 71.2 62 75.8
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 73.5
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 77.9
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 77.9
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.7e-11 70.5 66 71.2
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 7.5e-11 70.1 68 72.1
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 9.8e-11 69.7 66 68.2
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 1.3e-10 69.3 62 61.3
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.2e-10 68.6 68 75.0
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 69.1
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.8e-10 67.4 62 56.5
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 57.4
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 8.3e-10 66.6 68 51.5
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 8.3e-10 66.6 68 51.5
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 8.3e-10 66.6 66 72.7
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 65.2
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 70.6
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 70.6
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 70.6
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 70.6
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 68.2
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 71.2
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 69.1
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 61.8
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 62.1
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 54.5
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 62.1
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 50.0
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 50.0
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 50.0
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 69.1
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 3.1e-09 64.7 61 59.0
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 3.1e-09 64.7 66 69.7
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 4.1e-09 64.3 66 53.0
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.4e-09 63.9 66 68.2
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.4e-09 63.9 68 55.9
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 66.2
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 9.1e-09 63.2 66 57.6
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 67.6
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 66.7
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-08 62.8 67 64.2
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 2.0e-08 62.0 69 66.7
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 61.8
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 68.2
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 69.1
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 57.6
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 69.7
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 72.1
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 66.2
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 67.6
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 61.8
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 48.5
Potri.004G107100 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 72.1
Potri.004G107800 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 72.1
Potri.004G107900 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 72.1
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 3.5e-08 61.2 64 50.0
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 69.1
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 69.1
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 69.1
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.5e-08 60.8 65 64.6
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 7.7e-08 60.1 66 68.2
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 7.7e-08 60.1 61 70.5
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 1.3e-07 59.3 67 52.2
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 1.3e-07 59.3 69 68.1
Sabra17G0091100 Salix brachista HOM05D002873 ORTHO05D002978 1.3e-07 59.3 113 45.1
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 48.5
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 47.0
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 67.6
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 2.3e-07 58.5 67 53.7
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 2.3e-07 58.5 67 53.7
CiPaw.04G005400 Carya illinoinensis HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 66.2
Ciclev10013788m.g Citrus clementina HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 67.6
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 2.9e-07 58.2 60 70.0
SpUn0185_0020 Schrenkiella parvula HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 66.2
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 66.7
Aa31LG9G16900 Aethionema arabicum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 66.2
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 66 68.2
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 66 68.2
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 64.7
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 62.1
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 65.2
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 45.5
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 6.6e-07 57.0 63 50.8
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 8.6e-07 56.6 68 66.2
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 8.6e-07 56.6 60 63.3
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 8.6e-07 56.6 63 46.0
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 47.0
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 63.6
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.5e-06 55.8 65 64.6
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 47.0
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 67 47.8
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 1.9e-06 55.5 67 47.8
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 1.9e-06 55.5 67 47.8
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 65.2
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 50.0
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 57.6
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.5e-06 55.1 60 65.0
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.5e-06 55.1 35 77.1
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 46.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 46.2
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 3.3e-06 54.7 67 47.8
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 3.3e-06 54.7 33 78.8
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.3e-06 54.7 33 78.8
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 3.3e-06 54.7 33 78.8
Sabra04G0074800 Salix brachista HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 63.2
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 67.6
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 59.1
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 4.2e-06 54.3 60 68.3
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 5.5e-06 53.9 68 48.5
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 5.5e-06 53.9 68 48.5
FAN05G2856 Fragaria x ananassa HOM05D040180 ORTHO05D035606 5.5e-06 53.9 66 66.7
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 5.5e-06 53.9 63 54.0
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 5.5e-06 53.9 65 56.9
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 56.1
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 56.1
Carub.0007s3711 Capsella rubella HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 63.2
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 7.2e-06 53.5 65 64.6
Nitab4.5_0001324g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 62.1
Sabra17G0090900 Salix brachista HOM05D002873 ORTHO05D349352 7.2e-06 53.5 72 47.2
PGSC0003DMG400010052 Solanum tuberosum HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 63.6
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 54.5
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 9.5e-06 53.1 70 45.7
Duzib138G1180 Durio zibethinus HOM05D002873 ORTHO05D002978 9.5e-06 53.1 69 63.8
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 9.5e-06 53.1 67 47.8


User provided reference genes

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