Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 9.6e-141 503.4 246 100.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.5e-127 458.4 251 88.8
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.8e-107 392.9 218 83.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 6.9e-107 391.0 240 76.7
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.4e-106 388.7 241 78.0
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 5.9e-106 387.9 232 77.6
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.4e-104 383.3 241 76.3
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.4e-104 383.3 241 76.3
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.5e-104 381.3 223 77.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.6e-103 379.8 218 80.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.6e-103 378.6 216 79.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.8e-102 376.3 216 80.1
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.3e-102 375.9 238 71.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 6.7e-102 374.4 218 78.4
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 8.8e-102 374.0 241 74.7
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.5e-101 373.2 215 80.0
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.5e-101 372.5 241 75.1
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 5.7e-101 371.3 216 79.6
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.7e-100 368.6 221 78.3
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 9.1e-99 364.0 223 74.0
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.0e-98 362.8 220 78.2
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.5e-97 357.8 219 76.7
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 6.5e-97 357.8 237 71.3
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 9.4e-96 354.0 213 76.1
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.6e-95 353.2 216 73.1
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 6.7e-94 347.8 212 73.6
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 8.8e-94 347.4 212 72.2
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.1e-93 347.1 216 71.8
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.6e-93 345.9 212 72.6
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.3e-93 345.5 215 74.4
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 4.4e-93 345.1 212 71.7
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 9.7e-93 344.0 212 71.2
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.3e-92 343.6 217 73.7
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.7e-92 343.2 217 72.4
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.7e-92 343.2 213 72.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.2e-92 342.8 218 72.5
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 2.8e-92 342.4 216 72.2
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.8e-92 341.7 236 69.1
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.8e-92 341.7 236 68.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.8e-92 341.7 212 71.7
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.1e-91 340.5 223 70.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.4e-91 340.1 237 68.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.1e-91 339.0 217 71.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 5.3e-91 338.2 216 72.2
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 7.0e-91 337.8 218 71.6
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 7.0e-91 337.8 218 72.0
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 9.1e-91 337.4 219 72.6
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.6e-90 336.7 215 72.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 3.5e-90 335.5 218 71.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 3.5e-90 335.5 218 71.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.5e-90 335.1 226 68.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 5.9e-90 334.7 218 70.6
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.0e-89 334.0 222 66.7
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.3e-89 333.6 217 69.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.7e-89 333.2 216 69.4
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.7e-89 333.2 218 70.2
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.9e-89 332.4 216 71.8
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.5e-89 330.9 222 68.5
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 8.5e-89 330.9 218 70.2
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 8.5e-89 330.9 218 68.3
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 8.5e-89 330.9 217 69.1
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.9e-88 329.7 216 69.9
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.9e-88 329.7 214 71.0
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.5e-88 329.3 216 69.4
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 3.2e-88 328.9 216 68.5
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.2e-88 328.9 247 63.6
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-87 326.6 218 67.9
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.6e-87 326.6 211 71.1
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.1e-87 326.2 218 70.2
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.1e-87 326.2 218 68.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.7e-87 325.9 218 67.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 4.7e-87 325.1 211 69.2
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 8.0e-87 324.3 213 72.8
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.8e-86 323.2 213 71.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.0e-86 322.4 211 69.2
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.2e-86 321.6 211 69.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.8e-86 320.9 211 70.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.1e-85 320.5 211 69.7
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.1e-85 320.5 208 71.2
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.0e-85 319.7 214 67.8
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 4.4e-85 318.5 210 72.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.7e-85 318.2 245 61.6
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 8.2e-84 314.3 216 67.6
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.1e-83 312.4 218 65.6
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 3.1e-83 312.4 218 66.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.1e-83 312.4 219 66.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 4.1e-83 312.0 215 69.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 4.1e-83 312.0 221 69.2
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.0e-82 309.7 217 64.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.7e-82 309.3 221 67.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 5.9e-82 308.1 214 65.4
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.7e-81 306.6 206 69.9
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.7e-81 306.6 214 65.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.8e-81 305.4 218 63.8
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.5e-81 304.7 219 62.1
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.2e-80 302.0 229 64.2
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 5.5e-80 301.6 230 63.0
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.0e-78 297.4 191 70.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 4.4e-77 292.0 224 58.9
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.7e-76 290.0 211 64.5
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.5e-74 282.0 197 66.0
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.0e-73 280.8 178 71.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.9e-72 276.6 208 57.2
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.5e-72 276.2 195 66.7
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-71 273.5 197 64.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.0e-70 270.8 206 58.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.5e-69 266.9 195 67.2
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 7.5e-69 264.6 211 56.4
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.1e-67 258.8 206 56.8
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.0e-65 254.2 169 68.0
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 4.3e-64 248.8 204 57.4
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.7e-63 245.4 170 68.8
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.1e-63 245.0 144 75.0
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 7.5e-61 238.0 136 78.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.9e-60 236.1 144 71.5
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.7e-60 235.7 213 47.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.6e-58 230.3 212 52.8
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.7e-58 229.6 212 51.9
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-55 219.5 213 51.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 8.0e-55 218.0 193 51.3
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.8e-53 211.8 242 51.2
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.7e-52 209.1 126 73.0
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.1e-51 207.6 207 46.9
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 7.3e-48 194.9 170 52.9
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.8e-47 193.0 199 50.3
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.6e-42 175.6 163 50.3
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.6e-41 171.8 111 72.1
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.6e-39 166.0 207 43.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.6e-37 159.8 110 65.5
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 4.0e-30 136.0 230 36.1
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 5.2e-30 135.6 78 73.1
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.4e-29 132.9 139 50.4
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.6e-26 122.5 207 32.9
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.1e-25 119.0 72 76.4
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-23 114.4 132 47.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.8e-23 113.2 76 69.7
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.6e-23 112.8 209 35.9
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.6e-23 112.8 116 50.0
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-22 111.3 132 46.2
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 9.0e-22 108.2 66 71.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 5.4e-19 99.0 214 27.6
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.7e-18 96.7 70 64.3
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.9e-16 90.5 210 29.5
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.3e-16 89.7 64 64.1
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 8.1e-15 85.1 108 43.5
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.0e-14 82.8 84 50.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.6e-13 80.1 202 27.7
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.9e-11 73.9 179 27.9
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 2.3e-09 67.0 47 63.8
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.6e-08 62.4 82 41.5
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 7.4e-08 62.0 40 62.5
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 7.4e-08 62.0 145 27.6
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.3e-07 61.2 79 43.0
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 3.1e-06 56.6 59 52.5


User provided reference genes

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