Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 6.6e-102 374.0 186 100.0
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 6.9e-91 337.4 227 76.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 6.7e-78 294.3 173 81.5
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 8.7e-78 293.9 170 83.5
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 5.6e-77 291.2 170 82.4
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.1e-75 287.0 154 87.0
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 3.4e-74 282.0 161 82.0
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 5.8e-74 281.2 170 77.6
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 7.6e-74 280.8 172 77.9
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.0e-73 280.4 167 80.2
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 1.4e-72 276.6 180 76.1
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.9e-72 276.2 155 83.2
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 4.2e-72 275.0 176 77.3
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 7.1e-72 274.2 154 83.1
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 2.1e-71 272.7 181 74.0
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.1e-71 272.7 163 80.4
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.1e-71 272.7 154 82.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 3.5e-71 271.9 161 78.9
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 3.5e-71 271.9 162 79.6
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.6e-71 271.6 163 79.8
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 7.9e-71 270.8 176 76.7
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 7.9e-71 270.8 162 79.6
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.0e-70 270.4 173 75.7
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.0e-70 270.4 163 80.4
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.8e-70 269.6 164 78.7
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 2.3e-70 269.2 163 77.3
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 2.3e-70 269.2 157 80.9
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 2.3e-70 269.2 168 78.0
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 3.0e-70 268.9 164 78.7
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 5.1e-70 268.1 163 77.3
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 1.1e-69 266.9 165 78.2
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 1.5e-69 266.5 161 75.8
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.9e-69 266.2 176 75.0
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 2.5e-69 265.8 165 75.2
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 4.3e-69 265.0 174 75.3
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 4.3e-69 265.0 168 76.8
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 9.7e-69 263.8 167 76.6
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 9.7e-69 263.8 167 76.6
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 9.7e-69 263.8 167 76.6
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.3e-68 263.5 163 77.9
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 2.8e-68 262.3 164 77.4
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 3.7e-68 261.9 157 76.4
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 4.8e-68 261.5 163 74.8
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-67 260.4 163 76.7
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.1e-67 260.4 183 69.4
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.8e-67 259.6 174 71.8
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.4e-67 259.2 148 81.1
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.4e-67 259.2 160 77.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.4e-67 259.2 155 78.1
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.2e-66 256.9 152 78.9
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 2.6e-66 255.8 151 77.5
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.6e-66 255.8 170 71.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 3.4e-66 255.4 164 70.7
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 3.4e-66 255.4 151 77.5
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.0e-65 253.8 161 74.5
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.0e-65 253.8 164 74.4
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.7e-65 253.1 164 73.2
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.7e-65 253.1 164 75.0
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.9e-64 249.6 151 76.2
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.9e-64 249.6 181 67.4
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 3.2e-64 248.8 185 64.9
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 4.2e-64 248.4 158 75.9
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 4.2e-64 248.4 165 72.7
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.2e-64 248.4 152 75.7
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 4.2e-64 248.4 170 68.8
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 7.2e-64 247.7 146 77.4
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 7.2e-64 247.7 175 71.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 9.4e-64 247.3 176 70.5
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.4e-64 247.3 176 70.5
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.1e-63 246.1 159 74.8
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.7e-63 245.7 176 72.2
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.9e-63 244.2 176 69.3
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 7.9e-63 244.2 159 72.3
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.0e-62 243.8 176 68.8
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.0e-62 243.8 166 70.5
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.4e-62 243.4 165 72.7
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.0e-62 242.3 158 72.2
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.9e-62 241.9 174 65.5
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 5.1e-62 241.5 151 69.5
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.5e-61 240.0 155 73.5
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 5.7e-61 238.0 150 74.7
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 9.7e-61 237.3 165 70.3
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.2e-60 236.1 150 72.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 4.8e-60 235.0 150 71.3
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 8.2e-60 234.2 148 74.3
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 8.2e-60 234.2 182 66.5
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.1e-59 231.9 190 65.8
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 3.0e-54 215.7 152 71.7
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 6.3e-52 208.0 126 77.8
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 3.1e-51 205.7 152 62.5
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.5e-50 203.4 118 78.8
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.5e-50 203.4 120 77.5
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 2.6e-50 202.6 132 72.7
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.5e-48 196.1 148 59.5
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.6e-47 193.4 152 63.8
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 8.0e-47 191.0 134 65.7
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 3.9e-46 188.7 169 58.6
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 9.7e-45 184.1 155 61.3
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.1e-43 180.6 157 55.4
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 3.2e-40 169.1 157 56.1
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 9.4e-40 167.5 151 58.3
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-36 157.1 92 77.2
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-32 143.7 92 67.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.9e-32 143.3 114 62.3
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 1.2e-29 134.0 77 77.9
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.6e-29 132.9 92 71.7
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 9.5e-24 114.4 71 76.1
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.4e-13 79.3 50 76.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 7.0e-11 71.6 45 75.6
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 9.2e-11 71.2 39 84.6
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 3.9e-09 65.9 47 63.8
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 8.6e-09 64.7 46 65.2
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 8.6e-09 64.7 43 74.4
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 4.3e-08 62.4 73 50.7
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 1.1e-06 57.8 47 59.6


User provided reference genes

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