Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.1e-153 546.6 268 100.0
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 2.2e-146 522.3 268 95.1
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 4.0e-116 421.8 255 74.9
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 1.7e-114 416.4 262 73.3
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 3.7e-114 415.2 251 78.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.5e-112 408.7 264 72.7
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.1e-109 399.4 250 72.8
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.6e-109 398.7 252 73.4
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 5.2e-108 394.8 253 73.1
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 6.8e-108 394.4 253 71.5
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 8.9e-108 394.0 266 71.4
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.2e-107 393.7 262 72.1
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 9.9e-107 390.6 271 67.2
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 9.9e-107 390.6 255 71.0
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.9e-106 389.0 268 67.5
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 8.3e-106 387.5 255 69.0
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 4.1e-105 385.2 264 70.8
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 4.1e-105 385.2 254 67.7
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 9.2e-105 384.0 278 65.5
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.2e-104 383.6 254 66.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.2e-104 383.6 265 67.2
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.6e-104 383.3 255 69.0
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 4.6e-104 381.7 253 69.2
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 7.8e-104 380.9 259 66.8
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.3e-103 380.2 260 66.9
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 3.0e-103 379.0 264 70.1
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 3.0e-103 379.0 243 71.6
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 5.1e-103 378.3 256 68.4
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.1e-102 377.1 259 66.8
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.1e-102 377.1 256 68.0
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.9e-102 376.3 255 70.2
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 3.3e-102 375.6 256 66.4
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.3e-102 375.6 259 66.4
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 5.6e-102 374.8 250 68.4
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 5.6e-102 374.8 250 68.4
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 7.3e-102 374.4 254 69.3
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.6e-101 373.2 253 66.8
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.6e-101 373.2 259 64.9
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.6e-101 373.2 254 68.1
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 2.1e-101 372.9 253 67.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.8e-101 372.5 254 65.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 4.7e-101 371.7 250 68.0
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.2e-101 371.3 255 66.7
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-100 370.5 266 65.4
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.4e-100 370.2 243 70.4
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.4e-100 369.4 254 66.5
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 2.4e-100 369.4 255 66.3
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 2.4e-100 369.4 257 68.1
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 2.4e-100 369.4 258 67.8
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.2e-99 367.1 253 67.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-99 366.3 257 67.3
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 5.8e-99 364.8 250 67.6
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.8e-99 364.8 261 65.1
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 7.6e-99 364.4 263 64.3
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.7e-98 363.2 262 66.0
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.7e-98 363.2 266 63.9
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.7e-98 363.2 222 74.8
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 2.2e-98 362.8 299 61.2
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.9e-98 362.5 250 66.8
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.8e-98 362.1 243 68.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 3.8e-98 362.1 264 64.0
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 6.4e-98 361.3 262 65.3
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 6.4e-98 361.3 257 67.7
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 8.4e-98 360.9 262 66.0
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 8.4e-98 360.9 242 68.6
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 8.4e-98 360.9 262 63.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.1e-97 360.5 252 66.7
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.9e-97 359.8 257 66.1
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.9e-97 359.8 247 65.6
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.2e-97 359.0 262 65.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 4.2e-97 358.6 257 65.8
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 5.4e-97 358.2 247 66.0
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 5.4e-97 358.2 252 65.5
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 5.4e-97 358.2 290 60.7
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 2.1e-96 356.3 240 68.3
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 6.0e-96 354.8 266 62.4
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.3e-95 353.6 248 65.3
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.3e-95 353.6 248 65.3
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 1.7e-95 353.2 253 66.4
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.7e-95 353.2 262 64.5
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.7e-95 353.2 253 64.4
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 2.3e-95 352.8 244 65.6
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.0e-95 352.4 264 61.7
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 3.0e-95 352.4 262 63.4
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 3.0e-95 352.4 254 65.0
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.9e-95 352.1 262 63.0
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.1e-95 351.7 271 64.2
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.7e-95 350.9 262 64.5
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 8.7e-95 350.9 271 62.4
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.1e-94 350.5 255 64.3
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-94 350.5 262 64.5
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.1e-94 350.5 245 67.3
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.1e-94 350.5 230 72.2
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.9e-94 349.7 255 66.3
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 3.3e-94 349.0 245 66.9
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 7.3e-94 347.8 252 63.5
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 2.1e-93 346.3 252 63.1
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.6e-93 345.5 253 62.8
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 4.7e-93 345.1 313 54.3
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 8.1e-93 344.4 264 61.7
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 3.1e-92 342.4 252 61.9
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 4.0e-92 342.0 261 62.8
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 3.4e-91 339.0 287 56.4
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.6e-88 330.1 253 60.1
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.7e-88 329.3 252 62.3
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 8.7e-87 324.3 244 63.5
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.9e-86 323.2 242 60.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.9e-86 323.2 242 60.3
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.5e-83 313.5 186 76.3
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.1e-80 303.1 246 60.2
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 2.1e-80 303.1 264 58.0
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.1e-80 303.1 254 57.1
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.9e-80 301.2 212 69.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 3.9e-79 298.9 227 61.7
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 7.4e-78 294.7 254 54.3
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.1e-76 290.8 199 67.3
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.4e-76 289.7 199 67.3
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 6.9e-76 288.1 180 73.9
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 5.8e-75 285.0 186 69.4
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 6.7e-71 271.6 246 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.2e-69 265.0 229 53.3
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.8e-66 255.8 193 60.1
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 7.9e-64 248.1 236 49.6
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.8e-60 236.9 181 58.0
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.5e-57 226.5 245 48.6
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 7.2e-57 224.9 128 78.9
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 7.9e-56 221.5 170 57.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.5e-54 216.5 242 44.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.1e-52 211.1 196 52.0
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.5e-51 205.7 140 70.0
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.5e-51 205.7 142 64.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 5.5e-49 198.7 256 41.8
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.3e-47 193.4 145 62.8
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 2.3e-47 193.4 126 71.4
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 8.2e-45 184.9 221 43.0
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 8.2e-45 184.9 235 47.2
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.2e-42 176.8 282 37.6
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 3.2e-41 172.9 128 58.6
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.5e-41 172.2 108 72.2
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 5.5e-41 172.2 234 40.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 4.1e-36 156.0 114 59.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.2e-26 123.6 107 57.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.0e-23 113.2 79 64.6
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 2.2e-21 107.1 64 71.9
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.4e-20 102.4 81 59.3
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 4.2e-17 92.8 54 75.9
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 4.5e-11 72.8 197 26.9
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 8.0e-08 62.0 68 38.2


User provided reference genes

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