Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 3.8e-238 827.8 420 100.0
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 2.9e-214 748.4 421 91.4
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 4.9e-169 598.2 364 80.8
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 4.3e-165 585.1 409 73.3
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.1e-163 578.9 421 71.5
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.4e-162 575.1 357 79.6
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 2.2e-161 572.8 400 71.5
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 2.4e-160 569.3 385 74.8
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 6.0e-159 564.7 419 69.7
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 7.8e-159 564.3 413 70.7
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 5.1e-158 561.6 423 70.4
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.1e-157 560.5 386 74.9
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.9e-157 559.7 400 72.2
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 1.9e-157 559.7 367 76.3
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.9e-157 559.7 377 75.3
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 7.3e-157 557.8 427 67.4
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 7.3e-157 557.8 398 70.4
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.6e-156 556.6 427 67.7
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 3.6e-156 555.4 374 74.9
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 4.0e-155 552.0 363 76.3
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 6.8e-155 551.2 418 68.9
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.2e-154 550.4 400 71.8
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.0e-154 549.7 394 72.6
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 9.9e-154 547.4 385 72.2
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.7e-153 546.6 386 71.8
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 7.1e-152 541.2 394 71.3
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 9.2e-152 540.8 390 71.3
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 2.1e-151 539.7 357 74.8
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.7e-151 539.3 484 60.7
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 6.0e-151 538.1 371 70.9
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 1.0e-150 537.3 354 76.8
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.3e-150 537.0 372 73.9
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 2.3e-150 536.2 357 74.5
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 2.3e-150 536.2 372 71.2
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 3.0e-150 535.8 415 68.9
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 3.9e-150 535.4 373 70.8
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.1e-149 533.9 371 72.5
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.9e-149 533.1 415 67.0
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 1.9e-149 533.1 366 74.0
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 2.5e-149 532.7 393 67.7
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 9.6e-149 530.8 420 67.6
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 6.2e-148 528.1 342 77.2
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 8.1e-148 527.7 376 69.9
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 1.8e-147 526.6 384 71.9
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 2.4e-147 526.2 355 74.1
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 5.2e-147 525.0 391 67.3
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 6.9e-147 524.6 359 71.6
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 6.9e-147 524.6 354 72.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 9.0e-147 524.2 371 71.2
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 1.5e-146 523.5 427 65.8
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.3e-145 520.4 454 63.0
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.7e-145 520.0 355 71.3
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.2e-145 519.6 357 71.7
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.2e-145 519.6 357 71.7
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 6.4e-145 518.1 387 68.7
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 8.4e-145 517.7 415 65.1
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 8.4e-145 517.7 385 69.1
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.4e-144 516.9 393 66.4
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 1.9e-144 516.5 419 63.5
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.4e-144 516.2 415 64.6
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 4.2e-144 515.4 392 65.8
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 5.4e-144 515.0 357 71.1
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 7.1e-144 514.6 370 69.2
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 1.6e-143 513.5 351 74.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.6e-143 513.5 355 70.4
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.6e-143 513.5 420 66.4
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.6e-143 511.9 361 73.4
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 6.0e-143 511.5 369 69.1
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 7.8e-143 511.1 355 69.9
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.9e-142 508.8 355 69.9
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 3.9e-142 508.8 366 69.9
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 5.1e-142 508.4 359 69.9
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 5.1e-142 508.4 399 66.9
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.9e-141 506.5 354 69.2
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 3.3e-141 505.8 419 61.8
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.3e-140 503.8 343 72.6
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 3.6e-140 502.3 346 73.4
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 8.1e-140 501.1 431 64.0
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.1e-139 500.7 361 69.8
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 2.9e-137 492.7 390 66.2
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 3.8e-137 492.3 412 62.6
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 4.9e-137 491.9 327 74.9
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 8.4e-137 491.1 322 75.2
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 2.1e-135 486.5 371 67.7
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 3.5e-135 485.7 370 67.6
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 3.1e-131 472.6 353 69.1
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 6.9e-131 471.5 312 75.3
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 9.9e-130 467.6 344 68.6
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 1.9e-128 463.4 271 84.5
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 3.0e-126 456.1 359 66.6
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 6.7e-126 454.9 318 69.8
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 1.5e-125 453.8 312 73.4
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 5.5e-120 435.3 321 67.9
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 6.7e-110 401.7 357 57.7
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 5.3e-107 392.1 397 51.4
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.4e-104 381.3 358 55.3
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.3e-97 360.9 346 52.6
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 6.5e-89 332.0 388 53.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 7.2e-88 328.6 262 63.7
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.2e-87 327.8 261 59.0
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.2e-85 321.2 258 67.1
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 6.3e-84 315.5 186 82.8
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.1e-83 313.2 393 45.8
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 6.1e-71 272.3 185 73.0
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.3e-70 270.4 410 39.0
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.3e-70 270.4 410 39.0
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 6.3e-68 262.3 411 38.0
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.2e-66 258.1 183 66.1
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.6e-66 257.7 367 41.4
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 2.0e-61 240.7 245 52.2
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 6.0e-58 229.2 343 42.3
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 8.6e-57 225.3 517 30.8
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 8.9e-54 215.3 190 61.1
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 4.6e-50 203.0 357 37.8
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 6.0e-42 176.0 161 57.8
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 2.0e-37 161.0 120 62.5
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 3.3e-24 117.1 71 85.9
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 7.3e-24 115.9 70 80.0
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.0e-17 95.5 65 70.8
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 6.7e-17 92.8 68 70.6
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.6e-16 89.7 173 34.7
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.6e-15 88.2 167 34.7
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.7e-15 87.0 61 63.9
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.2e-15 86.3 171 32.7
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.6e-13 80.9 171 31.0
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 2.9e-12 77.4 92 51.1
SEGI_18941 Sequoiadendron giganteum HOM05D006074 ORTHO05D026256 2.8e-07 60.8 49 63.3


User provided reference genes

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