Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 5.3e-50 200.7 98 100.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 1.2e-38 162.9 84 89.3
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.0e-25 119.0 98 60.2
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.2e-24 115.5 98 54.1
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 8.5e-24 113.6 98 55.1
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 8.0e-22 107.1 93 59.1
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.0e-21 106.7 97 53.6
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.8e-21 105.9 109 51.4
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 4.0e-21 104.8 95 55.8
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.8e-21 103.6 100 51.0
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.3e-19 99.8 99 51.5
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.8e-18 95.9 98 51.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 3.1e-18 95.1 94 51.1
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 5.3e-18 94.4 89 51.7
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 9.1e-18 93.6 99 49.5
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.2e-17 93.2 96 49.0
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.6e-17 92.0 98 51.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 5.9e-17 90.9 98 49.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 7.7e-17 90.5 87 54.0
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.0e-16 90.1 95 49.5
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.3e-16 89.7 100 52.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.2e-16 89.0 97 43.3
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 5.0e-16 87.8 98 44.9
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.0e-16 87.8 100 44.0
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 6.5e-16 87.4 98 44.9
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 8.5e-16 87.0 98 45.9
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 1.1e-15 86.7 95 50.5
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.5e-15 86.3 108 45.4
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.5e-15 86.3 95 49.5
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.5e-15 85.5 90 52.2
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.5e-15 85.5 84 52.4
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.5e-15 85.5 89 56.2
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.2e-15 84.7 98 43.9
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 4.2e-15 84.7 98 48.0
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 5.5e-15 84.3 99 47.5
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.2e-15 84.0 95 48.4
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 7.2e-15 84.0 100 48.0
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.4e-15 83.6 95 48.4
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 9.4e-15 83.6 99 45.5
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.6e-14 82.8 90 48.9
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.1e-14 82.4 95 48.4
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 2.1e-14 82.4 94 48.9
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 2.1e-14 82.4 90 47.8
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 2.7e-14 82.0 100 47.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 3.6e-14 81.6 97 44.3
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 1.8e-13 79.3 79 49.4
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 3.0e-13 78.6 91 49.5
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.0e-13 78.6 87 48.3
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 4.0e-13 78.2 99 46.5
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 4.0e-13 78.2 90 51.1
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 6.8e-13 77.4 95 47.4
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 6.8e-13 77.4 79 49.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 8.8e-13 77.0 89 46.1
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 1.2e-12 76.6 91 48.4
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.2e-12 76.6 100 47.0
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-12 76.3 90 47.8
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.5e-12 76.3 98 41.8
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.7e-12 74.3 87 43.7
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 7.5e-12 73.9 91 46.2
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 7.5e-12 73.9 91 48.4
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 7.5e-12 73.9 96 45.8
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 7.5e-12 73.9 101 42.6
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 9.8e-12 73.6 91 47.3
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.3e-11 73.2 96 45.8
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 2.8e-11 72.0 91 44.0
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.8e-11 72.0 107 38.3
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 4.8e-11 71.2 90 41.1
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 4.8e-11 71.2 98 41.8
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.1e-10 70.1 94 41.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.1e-10 70.1 97 41.2
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 1.4e-10 69.7 90 45.6
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.4e-10 68.9 102 42.2
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 4.1e-10 68.2 119 36.1
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 4.1e-10 68.2 96 41.7
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 5.4e-10 67.8 98 42.9
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 7.0e-10 67.4 95 41.1
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 9.1e-10 67.0 89 43.8
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.2e-09 66.6 100 38.0
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.2e-09 66.6 97 40.2
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.2e-09 66.6 108 40.7
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 1.6e-09 66.2 97 44.3
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.7e-09 65.5 57 50.9
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 3.5e-09 65.1 90 43.3
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 3.5e-09 65.1 99 44.4
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.5e-09 65.1 98 41.8
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 3.5e-09 65.1 92 39.1
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 4.5e-09 64.7 90 43.3
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 4.5e-09 64.7 50 60.0
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 4.5e-09 64.7 101 43.6
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 5.9e-09 64.3 90 41.1
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 7.7e-09 63.9 98 39.8
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.0e-08 63.5 95 44.2
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 1.0e-08 63.5 42 66.7
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-08 63.5 42 66.7
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.3e-08 63.2 59 50.8
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 106 39.6
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.3e-08 63.2 51 54.9
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 1.3e-08 63.2 92 43.5
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 95 35.8
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 1.7e-08 62.8 82 43.9
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 1.7e-08 62.8 90 42.2
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.7e-08 62.8 92 42.4
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.2e-08 62.4 102 38.2
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.9e-08 62.0 108 39.8
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.9e-08 62.0 50 54.0
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.9e-08 62.0 101 39.6
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 3.8e-08 61.6 110 34.5
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 3.8e-08 61.6 90 37.8
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 3.8e-08 61.6 84 40.5
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 3.8e-08 61.6 57 50.9
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 3.8e-08 61.6 102 40.2
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 5.0e-08 61.2 70 41.4
BcaC03g17517 Brassica carinata HOM05D009946 ORTHO05D004401 6.5e-08 60.8 91 45.1
BolC2t11540H Brassica oleracea HOM05D009946 ORTHO05D004401 6.5e-08 60.8 91 45.1
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.5e-08 60.8 103 37.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.5e-08 60.8 106 36.8
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 8.5e-08 60.5 91 44.0
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 8.5e-08 60.5 91 44.0
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 8.5e-08 60.5 81 39.5
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 8.5e-08 60.5 81 39.5
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 8.5e-08 60.5 89 41.6
BcaB04g19463 Brassica carinata HOM05D009946 ORTHO05D004401 1.1e-07 60.1 82 45.1
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 109 39.4
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-07 60.1 42 64.3
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 1.1e-07 60.1 48 58.3
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 1.1e-07 60.1 48 58.3
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 1.5e-07 59.7 109 40.4
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 1.5e-07 59.7 109 40.4
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.5e-07 59.7 42 61.9
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.5e-07 59.7 42 61.9
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 1.5e-07 59.7 68 45.6
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.5e-07 58.9 91 36.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.2e-07 58.2 108 37.0
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 4.2e-07 58.2 92 41.3
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 5.5e-07 57.8 41 63.4
A06p40520 Brassica napus HOM05D009946 ORTHO05D004401 7.2e-07 57.4 84 41.7
BraA06t26971Z Brassica rapa HOM05D009946 ORTHO05D004401 7.2e-07 57.4 84 41.7
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 7.2e-07 57.4 46 54.3
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 9.4e-07 57.0 93 38.7
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 9.4e-07 57.0 81 39.5
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 9.4e-07 57.0 100 41.0
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 9.4e-07 57.0 86 41.9
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 1.2e-06 56.6 87 39.1
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 2.1e-06 55.8 43 62.8
BcaC04g23875 Brassica carinata HOM05D009946 ORTHO05D004401 2.1e-06 55.8 82 41.5
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.1e-06 55.8 50 58.0
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 2.1e-06 55.8 103 36.9
C02p54790 Brassica napus HOM05D009946 ORTHO05D004401 2.7e-06 55.5 82 43.9
AUR62039441 Chenopodium quinoa HOM05D004965 ORTHO05D004401 2.7e-06 55.5 35 65.7
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.7e-06 55.5 96 39.6
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.6e-06 55.1 45 57.8
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.7e-06 54.7 33 72.7
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 4.7e-06 54.7 32 75.0
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 4.7e-06 54.7 45 57.8


User provided reference genes

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