Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.2e-223 776.9 447 100.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.4e-198 696.4 447 85.0
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.0e-196 690.3 448 88.6
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-184 649.8 449 84.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.9e-165 584.7 448 75.0
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-158 563.5 449 71.9
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 9.5e-147 524.2 449 70.4
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 4.4e-144 515.4 450 66.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.4e-142 510.4 450 68.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.9e-139 500.0 454 68.7
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.7e-135 486.9 453 65.1
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.3e-132 476.5 454 61.2
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.1e-130 469.9 450 64.0
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 4.7e-130 468.8 454 63.4
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.0e-128 463.4 461 61.0
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 4.4e-128 462.2 451 62.1
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 9.9e-128 461.1 430 68.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-127 460.7 460 59.1
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-127 460.7 460 59.1
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.9e-127 459.5 472 62.9
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.4e-126 457.2 451 64.5
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.4e-126 456.4 454 62.3
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.2e-126 455.7 470 64.0
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 9.3e-126 454.5 448 62.9
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 8.7e-124 448.0 456 63.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.3e-123 445.7 451 62.3
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-122 444.1 469 59.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.6e-122 443.7 454 62.6
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.3e-121 438.7 430 67.2
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.9e-121 438.3 453 59.2
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.9e-119 433.0 469 58.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.9e-119 433.0 469 55.9
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.4e-118 429.9 454 60.6
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.4e-118 429.9 449 65.0
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.2e-118 429.5 470 58.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.2e-118 429.5 470 61.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.2e-118 429.1 454 63.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.2e-117 427.6 449 64.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.3e-116 424.1 451 62.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 3.9e-116 422.5 427 55.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 3.3e-115 419.5 454 57.7
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.4e-113 414.1 455 60.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.4e-113 414.1 454 58.1
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 6.9e-113 411.8 457 59.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 9.0e-113 411.4 455 60.7
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.2e-112 411.0 455 60.4
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.5e-112 410.6 482 56.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 7.6e-112 408.3 461 59.7
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.4e-111 405.2 455 60.9
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.4e-110 404.1 460 60.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 7.9e-109 398.3 491 51.7
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.1e-107 394.4 451 59.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.9e-107 393.7 469 55.2
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.5e-107 393.3 417 61.2
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 4.3e-107 392.5 455 58.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.4e-107 391.7 454 60.1
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.4e-107 391.7 454 60.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 7.4e-107 391.7 450 51.3
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 2.4e-105 386.7 426 63.8
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.9e-103 379.8 451 56.3
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.2e-96 357.8 450 58.2
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.9e-92 342.8 383 60.3
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 6.7e-92 342.0 454 53.5
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.3e-91 339.3 463 50.8
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 9.1e-89 331.6 448 45.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.6e-88 330.1 468 52.8
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.4e-84 317.8 450 46.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 8.8e-84 315.1 450 54.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.3e-83 313.2 427 57.1
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.7e-80 302.0 232 64.7
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.5e-78 297.0 449 48.6
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.6e-77 294.3 443 45.4
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 8.2e-74 282.0 483 47.4
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.4e-73 280.4 448 40.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.0e-64 250.8 372 55.6
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 8.0e-61 238.8 447 45.0
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.0e-59 234.2 467 43.7
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-53 213.0 156 64.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-53 213.0 156 64.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.0e-52 211.8 462 47.0
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.6e-48 198.0 298 42.3
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.9e-42 176.4 292 38.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 4.6e-40 169.9 283 38.2
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 7.8e-40 169.1 276 39.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 5.0e-39 166.4 453 30.9
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.0e-39 166.4 128 59.4
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 6.6e-39 166.0 128 57.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.1e-38 165.2 453 30.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-38 164.9 446 36.8
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-38 164.9 277 39.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.5e-38 164.1 468 36.3
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.3e-38 163.7 271 41.0
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 5.6e-38 162.9 440 36.1
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 5.6e-38 162.9 278 40.3
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.2e-37 161.8 463 31.3
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.1e-37 161.0 291 36.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.1e-37 161.0 291 36.8
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 271 37.3
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.6e-37 160.2 427 39.6
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 4.7e-37 159.8 278 38.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 4.7e-37 159.8 441 38.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.2e-37 159.5 299 35.5
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.2e-37 159.5 145 51.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 6.2e-37 159.5 284 38.4
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 6.2e-37 159.5 431 35.0
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.1e-37 159.1 220 41.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 8.1e-37 159.1 284 39.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 8.1e-37 159.1 141 51.1
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.1e-36 158.7 449 32.5
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.8e-36 157.9 287 38.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.1e-36 157.1 310 36.1
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.1e-36 157.1 130 54.6
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.0e-36 156.8 149 49.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.0e-36 156.8 289 37.4
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.8e-36 156.0 275 38.5
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.9e-36 155.6 438 32.2
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.2e-35 155.2 275 37.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.5e-35 154.8 282 38.3
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.5e-35 154.8 441 33.1
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.0e-35 154.5 283 37.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 129 55.8
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 129 55.8
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.4e-35 153.7 285 37.2
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.4e-35 153.3 291 37.5
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 4.4e-35 153.3 128 53.9
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.8e-35 152.1 130 55.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.3e-34 151.8 130 53.1
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.7e-34 151.4 130 51.5
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.7e-34 151.4 130 51.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.2e-34 151.0 264 35.6
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.2e-34 151.0 128 53.9
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 3.7e-34 150.2 286 35.0
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.7e-34 150.2 279 37.3
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 4.9e-34 149.8 305 36.7
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 8.3e-34 149.1 128 51.6
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.1e-33 148.7 375 42.7
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.4e-33 148.3 283 35.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.4e-33 148.3 286 35.7
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 1.9e-33 147.9 286 37.1
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.4e-33 147.5 281 35.9
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.2e-33 147.1 303 35.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.2e-33 147.1 280 36.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.2e-33 147.1 280 37.5
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.2e-33 147.1 273 38.8
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.1e-33 146.7 302 36.8
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.4e-33 146.4 130 50.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-32 145.2 430 36.3
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.6e-32 144.8 435 29.7
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-32 144.8 229 40.2
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-32 144.8 229 40.2
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 4.6e-32 143.3 280 36.4
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.0e-31 142.1 178 41.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.3e-30 137.1 315 34.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.3e-30 137.1 303 35.3
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 5.6e-30 136.3 293 34.8
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 5.6e-30 136.3 320 33.4
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 8.1e-29 132.5 148 50.7
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 3.4e-27 127.1 78 78.2
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-07 62.0 61 49.2
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 3.9e-07 60.5 81 46.9


User provided reference genes

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