Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.2e-26 121.7 69 100.0
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 4.7e-21 104.0 69 87.0
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 6.9e-20 100.1 69 85.5
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 3.8e-18 94.4 69 85.5
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 9.3e-17 89.7 54 94.4
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 2.1e-16 88.6 62 90.3
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 4.6e-16 87.4 67 79.1
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 4.6e-16 87.4 70 77.1
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 6.0e-16 87.0 63 77.8
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.7e-15 85.5 65 84.6
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 2.3e-15 85.1 70 78.6
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.3e-15 85.1 63 76.2
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 3.0e-15 84.7 64 81.2
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 3.0e-15 84.7 60 81.7
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 5.1e-15 84.0 72 75.0
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 8.7e-15 83.2 65 81.5
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 8.7e-15 83.2 68 75.0
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 1.1e-14 82.8 65 75.4
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.1e-14 82.8 65 81.5
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 1.5e-14 82.4 57 86.0
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 1.5e-14 82.4 61 82.0
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.9e-14 82.0 69 72.5
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 3.3e-14 81.3 69 75.4
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 3.3e-14 81.3 70 74.3
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 4.3e-14 80.9 70 74.3
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 4.3e-14 80.9 70 74.3
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.3e-14 80.1 70 75.7
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 9.6e-14 79.7 69 73.9
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.6e-13 79.0 58 84.5
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 3.6e-13 77.8 67 73.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 6.2e-13 77.0 64 76.6
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 6.2e-13 77.0 62 72.6
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.1e-13 76.6 61 75.4
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.1e-12 76.3 65 78.5
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.4e-12 75.9 61 78.7
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.4e-12 75.9 68 73.5
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.8e-12 75.5 69 71.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.8e-12 75.5 48 87.5
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 2.4e-12 75.1 57 77.2
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 2.4e-12 75.1 69 69.6
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 3.1e-12 74.7 59 76.3
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 4.0e-12 74.3 54 79.6
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 5.3e-12 73.9 48 85.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 5.3e-12 73.9 67 71.6
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 5.3e-12 73.9 62 77.4
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 5.3e-12 73.9 69 69.6
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 6.9e-12 73.6 63 81.0
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 9.0e-12 73.2 71 74.6
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.2e-11 72.8 63 69.8
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.0e-11 72.0 50 84.0
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 2.0e-11 72.0 55 81.8
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 2.0e-11 72.0 59 79.7
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.0e-11 72.0 70 70.0
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.6e-11 71.6 67 67.2
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.6e-11 71.6 48 83.3
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.6e-11 71.6 47 85.1
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.6e-11 71.6 48 81.2
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 2.6e-11 71.6 48 85.4
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 2.6e-11 71.6 67 65.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 3.4e-11 71.2 47 85.1
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 3.4e-11 71.2 47 85.1
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 3.4e-11 71.2 47 85.1
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.4e-11 71.2 57 80.7
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.4e-11 71.2 44 88.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 3.4e-11 71.2 69 68.1
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 4.5e-11 70.9 70 65.7
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 5.8e-11 70.5 57 75.4
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 57 75.4
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 47 83.0
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 49 83.7
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.8e-11 70.5 49 83.7
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.6e-11 70.1 63 73.0
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 7.6e-11 70.1 47 83.0
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 9.9e-11 69.7 63 73.0
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.3e-10 69.3 48 83.3
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-10 69.3 48 83.3
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 1.3e-10 69.3 69 66.7
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.7e-10 68.9 47 80.9
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.7e-10 68.9 55 74.5
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.7e-10 68.9 54 77.8
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.2e-10 68.6 69 68.1
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 2.9e-10 68.2 52 80.8
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 2.9e-10 68.2 62 69.4
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 3.8e-10 67.8 44 86.4
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.8e-10 67.8 48 83.3
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 4.9e-10 67.4 64 67.2
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 4.9e-10 67.4 69 69.6
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 6.4e-10 67.0 59 67.8
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 8.4e-10 66.6 55 78.2
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 8.4e-10 66.6 70 67.1
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.1e-09 66.2 55 74.5
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.9e-09 65.5 55 72.7
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 3.2e-09 64.7 48 79.2
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.2e-09 64.7 42 90.5
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 3.2e-09 64.7 48 79.2
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 3.2e-09 64.7 71 67.6
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 3.2e-09 64.7 42 85.7
Aa31LG8G10780 Aethionema arabicum HOM05D005458 ORTHO05D005672 4.2e-09 64.3 66 66.7
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 4.2e-09 64.3 44 81.8
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 5.4e-09 63.9 47 80.9
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 5.4e-09 63.9 64 67.2
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 9.3e-09 63.2 45 84.4
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.3e-09 63.2 64 68.8
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.2e-08 62.8 70 62.9
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.2e-08 62.8 55 69.1
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.6e-08 62.4 46 80.4
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 2.1e-08 62.0 57 70.2
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 2.1e-08 62.0 65 66.2
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 2.1e-08 62.0 64 65.6
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.7e-08 61.6 62 64.5
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 6.0e-08 60.5 65 64.6
Carub.0007s2892 Capsella rubella HOM05D005458 ORTHO05D005672 1.3e-07 59.3 35 91.4
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 1.3e-07 59.3 64 67.2
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 1.3e-07 59.3 52 71.2
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.8e-07 58.9 68 61.8
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.8e-07 58.9 64 70.3
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.3e-07 58.5 62 61.3
Phvul.010G019201 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 3.9e-07 57.8 87 48.3
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 1.1e-06 56.2 58 62.1
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 1.1e-06 56.2 58 62.1
FAN22G0946 Fragaria x ananassa HOM05D000270 ORTHO05D005672 1.1e-06 56.2 43 81.4
CSS0011220 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 1.5e-06 55.8 69 60.9
Haze_11612 Corylus avellana HOM05D005458 ORTHO05D005672 1.5e-06 55.8 32 93.8
Dinv27233 Davidia involucrata HOM05D012872 ORTHO05D005672 1.5e-06 55.8 45 68.9
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.5e-06 55.1 52 65.4
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 2.5e-06 55.1 40 85.0
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 2.5e-06 55.1 55 65.5
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 3.3e-06 54.7 57 61.4
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 4.3e-06 54.3 56 66.1
FAN12G0355 Fragaria x ananassa HOM05D005458 ORTHO05D005672 4.3e-06 54.3 47 68.1
FAN17G0397 Fragaria x ananassa HOM05D005458 ORTHO05D005672 4.3e-06 54.3 47 68.1
Actinidia13984 Actinidia chinensis HOM05D005458 ORTHO05D005672 7.4e-06 53.5 54 64.8
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 9.6e-06 53.1 63 61.9


User provided reference genes

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