Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G044300 Populus trichocarpa HOM05D002777 ORTHO05D001516 0.0e+00 1563.5 802 100.0
Potri.003G014056 Populus trichocarpa HOM05D002777 ORTHO05D001516 3.1e-71 274.2 696 32.2
Potri.001G038975 Populus trichocarpa HOM05D002777 ORTHO05D001516 6.3e-32 143.7 246 36.6
Potri.006G160950 Populus trichocarpa HOM05D002777 ORTHO05D001516 7.9e-27 126.7 93 64.5
Phvul.010G078700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.6e-19 101.3 276 26.1
Phvul.002G096200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.8e-18 99.0 251 23.9
Lj5g0003150 Lotus japonicus HOM05D002777 ORTHO05D001516 2.3e-18 98.6 388 23.7
Glyma.06G268900 Glycine max HOM05D002777 ORTHO05D001516 3.0e-18 98.2 344 24.1
Phvul.003G023200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.2e-18 97.4 315 22.9
Glyma.02G165100 Glycine max HOM05D002777 ORTHO05D001516 1.1e-17 96.3 410 24.4
Phvul.L001950 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.1e-17 96.3 251 25.5
Lj1g0024049 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-16 92.4 313 23.6
Phvul.004G009401 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.7e-16 92.4 295 23.7
Phvul.008G144313 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.2e-16 92.0 288 23.6
Lj2g0005575 Lotus japonicus HOM05D002777 ORTHO05D001516 8.2e-16 90.1 336 22.9
Lj6g0021963 Lotus japonicus HOM05D002777 ORTHO05D001516 1.4e-15 89.4 300 23.7
Phvul.011G184000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.4e-15 89.4 285 24.2
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.8e-15 89.0 318 22.3
Phvul.001G088300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.8e-15 89.0 315 22.2
Phvul.005G131700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.4e-15 88.6 312 22.4
Phvul.011G176000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.4e-15 88.6 313 23.0
Lsat_1_v5_gn_5_131521 Lactuca sativa HOM05D003915 ORTHO05D001516 3.1e-15 88.2 328 21.3
Phvul.001G126500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.1e-15 88.2 285 25.3
Phvul.003G099400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.1e-15 88.2 305 23.6
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 4.1e-15 87.8 406 23.2
HanXRQChr03g0092381 Helianthus annuus HOM05D003915 ORTHO05D001516 5.3e-15 87.4 361 21.3
Phvul.008G101400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.1e-15 86.7 372 23.7
ECA232G1209 Erigeron canadensis HOM05D000002 ORTHO05D000004 1.2e-14 86.3 314 22.6
Phvul.002G198900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.7e-14 85.1 263 23.2
Phvul.002G217700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.7e-14 85.1 260 24.2
Phvul.001G065800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.5e-14 84.7 366 23.5
Phvul.001G161800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.5e-14 84.7 309 22.7
Lsat_1_v5_gn_2_125141 Lactuca sativa HOM05D008939 ORTHO05D001516 4.5e-14 84.3 372 22.3
HanXRQChr03g0078981 Helianthus annuus HOM05D003915 ORTHO05D001516 5.9e-14 84.0 361 21.6
Lj4g0021570 Lotus japonicus HOM05D002777 ORTHO05D001516 5.9e-14 84.0 416 22.4
Phvul.010G072600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 7.7e-14 83.6 235 24.3
Lj5g0001897 Lotus japonicus HOM05D002777 ORTHO05D001516 1.0e-13 83.2 293 21.8
Medtr1148s0010 Medicago truncatula HOM05D008558 ORTHO05D001516 1.0e-13 83.2 299 25.1
Medtr7g108440 Medicago truncatula HOM05D002777 ORTHO05D001516 1.3e-13 82.8 263 23.6
Phvul.008G120900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.3e-13 82.8 299 24.4
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.7e-13 82.4 353 23.8
Lj2g0014793 Lotus japonicus HOM05D002777 ORTHO05D001516 2.2e-13 82.0 262 25.2
Lj3g0021978 Lotus japonicus HOM05D002777 ORTHO05D001516 3.8e-13 81.3 322 21.1
Lj4g0013222 Lotus japonicus HOM05D002777 ORTHO05D001516 3.8e-13 81.3 315 23.8
LjContig00357g0023212 Lotus japonicus HOM05D002777 ORTHO05D001516 3.8e-13 81.3 351 21.4
Lj3g0011764 Lotus japonicus HOM05D002777 ORTHO05D001516 5.0e-13 80.9 292 23.3
Phvul.001G152700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.5e-13 80.5 259 21.2
HanXRQChr15g0482051 Helianthus annuus HOM05D003915 ORTHO05D005386 8.5e-13 80.1 248 24.6
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 8.5e-13 80.1 345 22.6
Phvul.010G029500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.1e-12 79.7 262 22.9
Lj2g0003501 Lotus japonicus HOM05D002777 ORTHO05D001516 2.5e-12 78.6 380 24.2
Lj4g0027037 Lotus japonicus HOM05D002777 ORTHO05D001516 3.2e-12 78.2 348 20.7
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 5.5e-12 77.4 290 22.8
Lsat_1_v5_gn_7_89500 Lactuca sativa HOM05D008939 ORTHO05D011516 7.2e-12 77.0 312 20.5
Phvul.002G139600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 7.2e-12 77.0 306 22.2
Lj1g0017175 Lotus japonicus HOM05D002777 ORTHO05D001516 1.6e-11 75.9 273 23.4
Phvul.002G067600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.1e-11 75.5 202 25.7
Glyma.16G096100 Glycine max HOM05D002777 ORTHO05D001516 2.7e-11 75.1 365 23.6
HanXRQChr11g0339091 Helianthus annuus HOM05D003915 ORTHO05D005386 2.7e-11 75.1 276 23.6
Phvul.007G108700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.6e-11 74.7 261 23.4
Lj6g0012162 Lotus japonicus HOM05D002777 ORTHO05D001516 4.7e-11 74.3 327 22.9
Phvul.011G132400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 4.7e-11 74.3 303 24.1
Lj2g0000568 Lotus japonicus HOM05D002777 ORTHO05D001516 6.1e-11 73.9 315 21.3
Medtr2g060030 Medicago truncatula HOM05D008558 ORTHO05D011658 6.1e-11 73.9 325 22.5
Phvul.001G053800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.1e-11 73.9 258 22.5
Phvul.009G005600 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.1e-11 73.9 304 21.4
Phvul.010G071200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.1e-11 73.9 311 22.5
Lj6g0019563 Lotus japonicus HOM05D008220 ORTHO05D010358 8.0e-11 73.6 269 23.8
Lj2g0011520 Lotus japonicus HOM05D002777 ORTHO05D001516 1.0e-10 73.2 298 21.5
Phvul.008G164400 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.0e-10 73.2 304 23.0
TPR.G19363 Trifolium pratense HOM05D002777 ORTHO05D001516 1.0e-10 73.2 399 19.8
HanXRQChr11g0329921 Helianthus annuus HOM05D003915 ORTHO05D005386 1.4e-10 72.8 311 22.2
Phvul.002G156300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.4e-10 72.8 270 21.5
Glyma.13G027700 Glycine max HOM05D002777 ORTHO05D001516 2.3e-10 72.0 314 23.9
Lj4g0023448 Lotus japonicus HOM05D002777 ORTHO05D001516 2.3e-10 72.0 169 25.4
HanXRQChr05g0132981 Helianthus annuus HOM05D003915 ORTHO05D005386 3.0e-10 71.6 314 22.3
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.0e-10 71.6 164 25.0
HanXRQChr06g0166111 Helianthus annuus HOM05D003915 ORTHO05D001516 4.0e-10 71.2 272 22.8
LjContig00357g0018592 Lotus japonicus HOM05D002777 ORTHO05D001516 4.0e-10 71.2 147 26.5
Phvul.008G166100 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 4.0e-10 71.2 316 23.4
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 4.0e-10 71.2 228 23.7
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 4.0e-10 71.2 295 24.7
Glyma.20G003900 Glycine max HOM05D002777 ORTHO05D001516 5.2e-10 70.9 318 20.1
Phvul.001G154000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.2e-10 70.9 307 21.8
Phvul.010G135050 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.2e-10 70.9 245 22.0
ECA232G4385 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.8e-10 70.5 225 24.4
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.8e-10 70.5 175 25.1
Lsat_1_v5_gn_4_60221 Lactuca sativa HOM05D008939 ORTHO05D011516 8.8e-10 70.1 305 20.7
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 1.2e-09 69.7 191 25.1
ECA248G0911 Erigeron canadensis HOM05D000003 ORTHO05D011516 1.2e-09 69.7 379 20.8
Lsat_1_v5_gn_2_126760 Lactuca sativa HOM05D003915 ORTHO05D005386 1.2e-09 69.7 354 22.6
Manes.06G033475 Manihot esculenta HOM05D009258 ORTHO05D001516 1.2e-09 69.7 167 29.3
HanXRQChr12g0362171 Helianthus annuus HOM05D003915 ORTHO05D005386 1.5e-09 69.3 300 24.7
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-09 69.3 218 22.9
DCAR_028561 Daucus carota HOM05D004122 ORTHO05D004468 2.0e-09 68.9 380 23.7
Glyma.05G115300 Glycine max HOM05D002777 ORTHO05D001516 2.0e-09 68.9 293 21.8
Lsat_1_v5_gn_4_143721 Lactuca sativa HOM05D003915 ORTHO05D005386 2.0e-09 68.9 346 21.7
HanXRQChr10g0280261 Helianthus annuus HOM05D003915 ORTHO05D005386 2.6e-09 68.6 250 22.0
DCAR_015962 Daucus carota HOM05D012331 ORTHO05D004468 3.4e-09 68.2 340 23.5
ECA232G2828 Erigeron canadensis HOM05D000003 ORTHO05D005386 3.4e-09 68.2 245 24.1
Psat4g004920 Pisum sativum HOM05D007807 ORTHO05D001516 3.4e-09 68.2 375 21.3
Psat5g138320 Pisum sativum HOM05D002777 ORTHO05D001516 3.4e-09 68.2 299 23.1
HanXRQChr08g0228311 Helianthus annuus HOM05D003915 ORTHO05D005386 4.4e-09 67.8 276 22.8
Lj4g0007213 Lotus japonicus HOM05D002777 ORTHO05D001516 4.4e-09 67.8 370 21.4
Lj6g0012166 Lotus japonicus HOM05D002777 ORTHO05D001516 4.4e-09 67.8 213 21.6
Phvul.010G066000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.7e-09 67.4 301 20.9
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 5.7e-09 67.4 246 22.4
Psat3g118120 Pisum sativum HOM05D007807 ORTHO05D001516 9.8e-09 66.6 355 20.8
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 9.8e-09 66.6 282 28.0
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-08 66.2 398 21.4
Lsat_1_v5_gn_4_170561 Lactuca sativa HOM05D002777 ORTHO05D001516 1.3e-08 66.2 77 39.0
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-08 66.2 342 21.3
Medtr6g024400 Medicago truncatula HOM05D008558 ORTHO05D048850 1.3e-08 66.2 304 21.4
Phvul.007G112900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.3e-08 66.2 257 25.7
Psat0s1204g0040 Pisum sativum HOM05D007807 ORTHO05D001516 1.3e-08 66.2 353 22.4
HanXRQChr02g0035471 Helianthus annuus HOM05D003915 ORTHO05D005386 2.2e-08 65.5 250 22.4
HanXRQChr10g0307071 Helianthus annuus HOM05D003915 ORTHO05D005386 2.8e-08 65.1 285 22.1
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-08 65.1 401 20.9
Phvul.008G166850 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.7e-08 64.7 244 22.5
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.7e-08 64.7 241 24.5
ECA234G1839 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.8e-08 64.3 239 24.3
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 4.8e-08 64.3 129 29.5
Lj6g0024174 Lotus japonicus HOM05D002777 ORTHO05D001516 6.3e-08 63.9 262 23.3
Psat5g032920 Pisum sativum HOM05D007807 ORTHO05D001516 6.3e-08 63.9 335 22.1
HanXRQChr08g0227851 Helianthus annuus HOM05D000003 ORTHO05D000004 8.3e-08 63.5 371 23.7
Lsat_1_v5_gn_6_61781 Lactuca sativa HOM05D003915 ORTHO05D005386 8.3e-08 63.5 291 21.6
Lj6g0012086 Lotus japonicus HOM05D002777 ORTHO05D001516 8.3e-08 63.5 228 24.1
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.3e-08 63.5 245 23.7
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.3e-08 63.5 237 21.5
DCAR_007894 Daucus carota HOM05D004122 ORTHO05D004468 1.1e-07 63.2 321 21.8
Lj2g0027421 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-07 62.8 170 25.3
HanXRQChr01g0005411 Helianthus annuus HOM05D003915 ORTHO05D005386 3.1e-07 61.6 320 20.9
Lj5g0007242 Lotus japonicus HOM05D002777 ORTHO05D001516 3.1e-07 61.6 361 21.9
Lj6g0001957 Lotus japonicus HOM05D002777 ORTHO05D000006 3.1e-07 61.6 151 26.5
Lsat_1_v5_gn_7_23940 Lactuca sativa HOM05D003915 ORTHO05D005386 4.1e-07 61.2 326 20.6
vmacro09252 Vaccinium macrocarpon HOM05D008219 ORTHO05D000487 4.1e-07 61.2 137 29.2
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 5.4e-07 60.8 334 23.1
Medtr7g083690 Medicago truncatula HOM05D000003 ORTHO05D000004 5.4e-07 60.8 323 20.7
Phvul.011G105300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 5.4e-07 60.8 310 22.9
Phvul.004G129200 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 7.0e-07 60.5 237 29.5
HanXRQChr12g0376001 Helianthus annuus HOM05D000003 ORTHO05D000004 9.1e-07 60.1 354 22.3
Lj3g0010325 Lotus japonicus HOM05D008220 ORTHO05D010358 1.2e-06 59.7 407 22.1
LjContig00357g0004481 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-06 59.7 96 27.1
Medtr5g073130 Medicago truncatula HOM05D008558 ORTHO05D001516 1.2e-06 59.7 319 21.6
Phvul.002G200500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.6e-06 59.3 216 24.1
Potri.015G123750 Populus trichocarpa HOM05D058153 ORTHO05D001516 1.6e-06 59.3 110 36.4
Medtr8g103960 Medicago truncatula HOM05D008558 ORTHO05D001516 2.0e-06 58.9 92 34.8
Phvul.008G116900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.0e-06 58.9 203 20.7
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 2.7e-06 58.5 186 25.8
HanXRQChr14g0428581 Helianthus annuus HOM05D003915 ORTHO05D005386 2.7e-06 58.5 272 19.9
HanXRQChr16g0525111 Helianthus annuus HOM05D003915 ORTHO05D005386 2.7e-06 58.5 322 24.8
Medtr6g053340 Medicago truncatula HOM05D008558 ORTHO05D001516 2.7e-06 58.5 173 23.1
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.7e-06 58.5 159 24.5
Lj1g0011597 Lotus japonicus HOM05D002777 ORTHO05D001516 3.5e-06 58.2 163 27.0
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 5.9e-06 57.4 154 26.6
Psat5g175040 Pisum sativum HOM05D007807 ORTHO05D001516 7.7e-06 57.0 84 33.3
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 7.7e-06 57.0 256 22.7


User provided reference genes

Program Settings