Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.2e-44 181.4 93 100.0
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 6.2e-32 140.6 93 79.6
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.8e-31 139.0 92 73.9
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.2e-30 136.3 92 77.2
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 4.4e-30 134.4 92 72.8
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 5.8e-30 134.0 85 78.8
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 9.8e-30 133.3 90 74.4
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.7e-29 131.3 92 71.7
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 3.7e-29 131.3 91 73.6
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.7e-29 131.3 91 73.6
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.7e-29 131.3 91 73.6
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.7e-29 131.3 91 73.6
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 4.9e-29 131.0 91 74.7
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 4.9e-29 131.0 93 75.3
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 4.9e-29 131.0 91 73.6
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 6.4e-29 130.6 93 74.2
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 6.4e-29 130.6 91 72.5
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 6.4e-29 130.6 91 72.5
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 8.3e-29 130.2 86 76.7
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 1.1e-28 129.8 91 72.5
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.4e-28 129.4 91 72.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 1.9e-28 129.0 86 75.6
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 1.9e-28 129.0 92 71.7
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 1.9e-28 129.0 89 74.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 2.4e-28 128.6 92 70.7
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 2.4e-28 128.6 93 72.0
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 2.4e-28 128.6 92 70.7
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 3.2e-28 128.3 91 72.5
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 4.1e-28 127.9 88 73.9
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.6e-27 125.9 93 72.0
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 1.6e-27 125.9 92 69.6
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 2.1e-27 125.6 86 73.3
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 2.7e-27 125.2 92 71.7
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 2.7e-27 125.2 92 68.5
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 3.5e-27 124.8 82 75.6
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.5e-27 124.8 92 68.5
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.6e-27 124.4 87 74.7
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 4.6e-27 124.4 93 65.6
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 4.6e-27 124.4 82 75.6
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 6.0e-27 124.0 83 74.7
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 6.0e-27 124.0 89 70.8
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 6.0e-27 124.0 89 70.8
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 7.8e-27 123.6 84 73.8
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 7.8e-27 123.6 92 69.6
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.0e-26 123.2 90 71.1
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 1.0e-26 123.2 86 73.3
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 1.3e-26 122.9 91 71.4
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.7e-26 122.5 92 67.4
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 2.3e-26 122.1 91 68.1
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 2.3e-26 122.1 86 69.8
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 2.3e-26 122.1 86 70.9
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 3.0e-26 121.7 82 75.6
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 3.0e-26 121.7 80 77.5
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 3.0e-26 121.7 85 72.9
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 3.0e-26 121.7 80 77.5
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 3.0e-26 121.7 80 77.5
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 3.0e-26 121.7 80 77.5
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 3.9e-26 121.3 79 77.2
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 3.9e-26 121.3 80 73.8
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.9e-26 121.3 81 74.1
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 5.1e-26 120.9 92 64.1
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 5.1e-26 120.9 92 64.1
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 5.1e-26 120.9 92 64.1
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 5.1e-26 120.9 86 72.1
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 5.1e-26 120.9 86 72.1
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 6.6e-26 120.6 79 75.9
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 8.6e-26 120.2 86 70.9
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 8.6e-26 120.2 85 70.6
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 1.1e-25 119.8 82 72.0
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 1.9e-25 119.0 86 68.6
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.9e-25 119.0 86 69.8
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 2.5e-25 118.6 82 72.0
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 2.5e-25 118.6 92 63.0
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.5e-25 118.6 80 75.0
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 2.5e-25 118.6 85 68.2
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 2.5e-25 118.6 82 72.0
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 3.3e-25 118.2 89 67.4
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 3.3e-25 118.2 84 70.2
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 3.3e-25 118.2 92 65.2
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 3.3e-25 118.2 89 69.7
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 3.3e-25 118.2 82 70.7
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 3.3e-25 118.2 90 66.7
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 4.3e-25 117.9 90 65.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 4.3e-25 117.9 89 68.5
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 5.6e-25 117.5 89 64.0
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 5.6e-25 117.5 86 68.6
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 7.3e-25 117.1 90 68.9
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 7.3e-25 117.1 86 68.6
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 9.5e-25 116.7 82 68.3
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 9.5e-25 116.7 82 68.3
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 9.5e-25 116.7 91 68.1
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 9.5e-25 116.7 91 64.8
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 9.5e-25 116.7 82 72.0
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.2e-24 116.3 86 67.4
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 2.1e-24 115.5 81 71.6
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 2.1e-24 115.5 93 64.5
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 2.8e-24 115.2 103 60.2
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 3.6e-24 114.8 87 67.8
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 3.6e-24 114.8 82 69.5
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 3.6e-24 114.8 121 54.5
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 1.1e-23 113.2 80 73.8
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 1.4e-23 112.8 82 67.1
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.8e-23 112.5 92 63.0
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 2.3e-23 112.1 80 67.5
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 4.0e-23 111.3 92 60.9
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 4.0e-23 111.3 92 60.9
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 6.8e-23 110.5 79 68.4
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 8.9e-23 110.2 95 62.1
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 1.5e-22 109.4 78 70.5
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 7.6e-22 107.1 81 67.9
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 2.7e-19 98.6 78 62.8
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 3.0e-18 95.1 68 70.6
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.3e-17 91.7 132 43.2
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.3e-17 91.7 144 40.3
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 7.3e-17 90.5 78 59.0
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 1.6e-16 89.4 57 77.2
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 4.7e-16 87.8 62 72.6
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.8e-13 78.2 55 74.5
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.8e-13 78.2 55 74.5
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.8e-13 78.2 55 74.5
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 1.9e-09 65.9 85 43.5
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 9.6e-09 63.5 53 64.2
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 1.1e-07 60.1 44 70.5


User provided reference genes

Program Settings