Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 5.2e-44 180.6 90 100.0
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.6e-37 157.9 89 87.6
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.5e-35 152.5 90 84.4
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 1.5e-30 136.0 87 78.2
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 6.2e-29 130.6 88 73.9
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 1.4e-28 129.4 88 76.1
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.3e-26 122.9 88 70.5
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 2.2e-26 122.1 89 69.7
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.2e-26 122.1 89 68.5
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 8.3e-26 120.2 88 68.2
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 5.4e-25 117.5 88 68.2
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 7.1e-25 117.1 86 66.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 4.6e-24 114.4 91 65.9
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.3e-23 112.8 89 61.8
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 1.3e-23 112.8 89 61.8
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.9e-23 111.3 89 61.8
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 3.9e-23 111.3 93 62.4
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 5.1e-23 110.9 89 65.2
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 5.1e-23 110.9 83 68.7
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 6.6e-23 110.5 82 68.3
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 6.6e-23 110.5 87 63.2
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 3.3e-22 108.2 93 60.2
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 4.3e-22 107.8 92 60.9
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 9.5e-22 106.7 88 56.8
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 9.5e-22 106.7 90 61.1
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 9.5e-22 106.7 88 61.4
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.2e-21 106.3 92 58.7
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 1.6e-21 105.9 89 62.9
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.6e-21 105.9 88 64.8
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.6e-21 105.9 89 65.2
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 2.8e-21 105.1 88 60.2
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 1.1e-20 103.2 78 67.9
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.8e-20 102.4 87 57.5
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 7.6e-19 97.1 81 59.3
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 7.6e-19 97.1 86 59.3
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 9.9e-19 96.7 80 67.5
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 1.7e-18 95.9 84 54.8
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 1.7e-18 95.9 83 60.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 1.7e-18 95.9 88 56.8
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 3.8e-18 94.7 84 60.7
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 6.4e-18 94.0 84 56.0
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 8.4e-18 93.6 88 58.0
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 1.1e-17 93.2 87 59.8
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 3.2e-17 91.7 78 64.1
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 5.4e-17 90.9 96 52.1
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 5.4e-17 90.9 96 52.1
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.2e-16 89.7 64 70.3
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.6e-16 89.4 87 50.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.6e-16 89.4 87 52.9
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 2.1e-16 89.0 85 51.8
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.1e-16 89.0 88 56.8
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 4.6e-16 87.8 77 57.1
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 1.3e-15 86.3 88 51.1
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.7e-15 85.9 90 53.3
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 2.3e-15 85.5 79 53.2
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 2.3e-15 85.5 85 48.2
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.0e-15 85.1 77 57.1
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 5.1e-15 84.3 77 55.8
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 6.6e-15 84.0 86 51.2
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.5e-14 82.8 86 50.0
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 1.5e-14 82.8 89 43.8
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.6e-13 79.3 77 54.5
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 3.6e-13 78.2 84 47.6
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 3.6e-13 78.2 84 47.6
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.1e-12 76.6 82 48.8
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.8e-12 75.9 87 43.7
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.1e-12 75.1 86 45.3
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.2e-11 73.2 68 55.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 2.2e-10 68.9 78 47.4
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 2.2e-10 68.9 78 44.9
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.9e-10 68.6 78 46.2
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 2.9e-10 68.6 78 46.2
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 3.8e-10 68.2 90 41.1
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 6.4e-10 67.4 78 43.6
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.4e-09 66.2 78 44.9
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 1.4e-09 66.2 78 46.2
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.9e-09 65.9 79 41.8
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.9e-09 65.9 78 42.3
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.9e-09 65.9 79 41.8
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 5.4e-09 64.3 79 39.2
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 5.4e-09 64.3 79 39.2
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 5.4e-09 64.3 79 39.2
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 5.4e-09 64.3 78 39.7
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 1.6e-08 62.8 79 38.0
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 2.1e-08 62.4 78 41.0
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 3.5e-08 61.6 79 40.5
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 7.3e-06 53.9 81 42.0


User provided reference genes

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