Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.7e-58 228.0 117 100.0
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 2.7e-16 89.0 64 70.3
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.0e-16 87.8 64 68.8
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 8.6e-15 84.0 64 64.1
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 9.5e-14 80.5 64 65.6
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 2.3e-12 75.9 64 64.1
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 5.2e-12 74.7 59 62.7
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 5.2e-12 74.7 66 63.6
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 6.8e-12 74.3 65 64.6
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 1.5e-11 73.2 69 59.4
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 4.4e-11 71.6 64 57.8
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 5.8e-11 71.2 51 64.7
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 5.8e-11 71.2 65 56.9
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 7.5e-11 70.9 53 66.0
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 3.7e-10 68.6 66 57.6
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 4.9e-10 68.2 66 56.1
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 6.4e-10 67.8 53 62.3
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 6.4e-10 67.8 67 56.7
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.9e-09 66.2 66 56.1
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 1.9e-09 66.2 50 66.0
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.9e-09 66.2 53 60.4
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 1.9e-09 66.2 72 51.4
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.4e-09 65.9 66 54.5
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.2e-09 65.5 63 47.6
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 3.2e-09 65.5 63 47.6
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 5.4e-09 64.7 72 50.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 5.4e-09 64.7 68 51.5
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 7.1e-09 64.3 63 47.6
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 7.1e-09 64.3 82 45.1
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 7.1e-09 64.3 57 56.1
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.2e-08 63.5 48 64.6
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 1.6e-08 63.2 64 53.1
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 2.1e-08 62.8 69 52.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 2.1e-08 62.8 57 52.6
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.7e-08 62.4 63 54.0
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 7.8e-08 60.8 64 43.8
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 1.0e-07 60.5 49 63.3
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.3e-07 60.1 56 50.0
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.3e-07 60.1 57 49.1
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.7e-07 59.7 53 52.8
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 2.3e-07 59.3 46 60.9
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.9e-07 58.5 66 43.9
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.1e-07 58.2 57 45.6
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 6.6e-07 57.8 57 49.1
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 6.6e-07 57.8 57 49.1
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 6.6e-07 57.8 48 60.4
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 1.1e-06 57.0 77 41.6
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 1.1e-06 57.0 64 46.9
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 1.5e-06 56.6 78 38.5
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.3e-06 55.5 63 47.6
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.3e-06 55.5 63 47.6
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.3e-06 55.5 68 39.7
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 4.3e-06 55.1 72 41.7
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 7.3e-06 54.3 91 41.8
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 7.3e-06 54.3 78 39.7
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 7.3e-06 54.3 69 46.4
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 9.5e-06 53.9 78 42.3


User provided reference genes

Program Settings