Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.7e-160 569.3 287 100.0
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 5.6e-100 368.2 286 68.2
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 5.1e-93 345.1 278 66.2
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 5.3e-42 175.6 289 40.1
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.5e-41 172.6 299 37.8
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.3e-40 171.0 253 43.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.7e-40 170.6 269 40.9
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.8e-40 169.5 252 42.5
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 8.5e-40 168.3 250 43.6
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.5e-39 167.5 286 38.8
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.9e-39 167.2 271 37.6
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 2.5e-39 166.8 246 41.1
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 2.5e-39 166.8 263 41.8
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-37 161.4 266 40.6
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 3.0e-37 159.8 266 40.2
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 5.2e-37 159.1 257 41.2
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 3.4e-36 156.4 263 39.5
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.2e-35 153.7 255 38.0
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 2.4e-34 150.2 273 36.3
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 2.4e-34 150.2 271 37.3
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.1e-34 149.8 281 35.2
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.1e-34 149.8 281 35.2
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 5.3e-34 149.1 280 36.8
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 1.2e-33 147.9 250 41.2
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.0e-33 147.1 257 37.4
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 3.5e-33 146.4 257 38.5
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.5e-33 146.4 257 38.1
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 6.5e-32 142.1 312 34.9
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 1.6e-30 137.5 228 39.9
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.6e-30 137.5 228 39.5
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 3.6e-30 136.3 227 37.0
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 8.0e-30 135.2 262 37.0
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.0e-29 134.8 267 40.4
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.0e-29 134.8 232 39.2
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.4e-29 134.4 164 47.0
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 2.3e-29 133.7 286 36.4
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 4.0e-29 132.9 261 34.1
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.8e-29 132.1 264 36.4
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 2.6e-28 130.2 300 35.0
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.6e-28 130.2 264 36.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.7e-27 127.5 278 33.8
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.2e-27 127.1 178 41.6
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 2.2e-27 127.1 254 37.4
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.7e-27 126.3 281 31.7
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 8.3e-27 125.2 239 34.3
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.1e-26 124.8 264 33.7
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.8e-26 124.0 162 42.6
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 4.1e-26 122.9 206 38.8
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.1e-26 122.9 206 37.9
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 5.4e-26 122.5 288 33.3
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 2.7e-25 120.2 199 38.7
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 4.5e-25 119.4 199 38.7
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 7.7e-25 118.6 160 43.8
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 7.7e-25 118.6 204 38.7
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 2.3e-24 117.1 229 35.4
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 6.6e-24 115.5 134 46.3
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 8.6e-24 115.2 211 37.9
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 8.6e-24 115.2 220 37.7
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 1.5e-23 114.4 211 36.5
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 1.9e-23 114.0 103 50.5
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 7.2e-23 112.1 119 46.2
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 9.5e-23 111.7 249 32.5
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 1.2e-22 111.3 214 37.9
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.2e-22 111.3 149 41.6
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.1e-22 110.5 123 46.3
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.1e-22 110.5 123 46.3
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 4.7e-22 109.4 131 48.1
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 1.8e-21 107.5 101 55.4
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 3.0e-21 106.7 133 42.9
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 3.0e-21 106.7 107 54.2
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 4.0e-21 106.3 246 31.7
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 4.0e-21 106.3 253 31.6
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 8.9e-21 105.1 108 50.0
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.5e-20 104.4 105 52.4
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.5e-20 104.4 184 33.7
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.0e-20 104.0 134 43.3
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 4.4e-20 102.8 309 31.7
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.7e-19 100.9 131 42.7
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 2.2e-19 100.5 213 36.6
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 2.8e-19 100.1 176 36.4
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 3.7e-19 99.8 167 40.1
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 3.7e-19 99.8 166 36.7
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.9e-19 99.4 107 48.6
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 8.3e-19 98.6 140 41.4
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 8.3e-19 98.6 140 41.4
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.1e-18 98.2 131 44.3
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.1e-18 98.2 181 34.3
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 1.4e-18 97.8 119 42.0
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.8e-18 97.4 140 39.3
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 2.4e-18 97.1 119 41.2
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 4.1e-18 96.3 116 46.6
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 4.1e-18 96.3 107 47.7
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 5.4e-18 95.9 106 47.2
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 5.4e-18 95.9 135 40.7
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 9.2e-18 95.1 120 40.8
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.2e-17 94.7 126 42.1
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 1.6e-17 94.4 118 42.4
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.6e-17 94.4 199 35.2
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 2.0e-17 94.0 114 43.9
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 2.0e-17 94.0 201 31.8
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 2.0e-17 94.0 228 30.7
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 2.0e-17 94.0 125 42.4
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.7e-17 93.6 176 36.4
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 3.5e-17 93.2 241 32.8
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 3.5e-17 93.2 119 42.9
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 3.5e-17 93.2 115 40.9
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 3.5e-17 93.2 115 42.6
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 4.5e-17 92.8 109 44.0
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 5.9e-17 92.4 171 34.5
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 7.8e-17 92.0 117 41.9
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 7.8e-17 92.0 114 46.5
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.0e-16 91.7 128 40.6
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.0e-16 91.7 130 40.8
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 1.3e-16 91.3 101 44.6
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.7e-16 90.9 163 37.4
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 2.3e-16 90.5 117 47.0
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.3e-16 90.5 156 38.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.3e-16 90.5 123 42.3
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.9e-16 90.1 103 45.6
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 2.9e-16 90.1 96 46.9
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 3.9e-16 89.7 158 39.2
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 3.9e-16 89.7 103 46.6
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 3.9e-16 89.7 102 39.2
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 5.0e-16 89.4 133 42.1
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 6.6e-16 89.0 143 37.1
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 6.6e-16 89.0 176 35.2
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 8.6e-16 88.6 113 43.4
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 8.6e-16 88.6 118 44.9
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 8.6e-16 88.6 107 44.9
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.5e-15 87.0 140 38.6
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-15 86.7 105 42.9
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-15 86.7 121 40.5
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-15 86.7 121 40.5
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 5.6e-15 85.9 107 40.2
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 5.6e-15 85.9 117 43.6
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 7.3e-15 85.5 128 41.4
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 7.3e-15 85.5 263 29.3
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 9.5e-15 85.1 118 39.8
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 9.5e-15 85.1 125 40.8
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.2e-14 84.7 123 39.0
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 1.2e-14 84.7 107 45.8
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.6e-14 84.3 121 39.7
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 2.1e-14 84.0 112 39.3
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 2.8e-14 83.6 105 43.8
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 8.0e-14 82.0 86 51.2
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 1.0e-13 81.6 96 46.9
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.4e-13 81.3 150 37.3
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.0e-13 79.7 101 42.6
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 5.2e-13 79.3 126 37.3
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 6.8e-13 79.0 131 36.6
Prupe.1G188100 Prunus persica HOM05D003174 ORTHO05D003439 6.8e-13 79.0 180 35.6
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.5e-12 77.8 89 42.7
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.4e-12 76.3 119 41.2
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.8e-12 75.9 128 39.8
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.8e-12 75.9 114 41.2
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 7.5e-12 75.5 92 43.5
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 9.8e-12 75.1 92 42.4
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 2.2e-11 73.9 107 39.3
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 2.9e-11 73.6 92 41.3
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 3.7e-11 73.2 140 32.9
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 4.9e-11 72.8 103 38.8
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 6.4e-11 72.4 95 42.1
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 8.3e-11 72.0 95 42.1
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 8.3e-11 72.0 72 48.6
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 1.4e-10 71.2 141 32.6
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 1.9e-10 70.9 96 41.7
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.4e-10 70.5 67 50.7
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 3.2e-10 70.1 120 36.7
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 5.4e-10 69.3 106 36.8
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 9.2e-10 68.6 93 41.9
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 2.0e-09 67.4 81 44.4
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 2.7e-09 67.0 106 36.8
Eucgr.J00597 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.6e-09 66.2 200 30.0
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 5.0e-08 62.8 125 36.0
SEGI_15530 Sequoiadendron giganteum HOM05D057352 ORTHO05D003439 1.2e-06 58.2 135 28.9
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.2e-06 58.2 128 34.4
Zm00001eb310180 Zea mays HOM05D003174 ORTHO05D003439 2.8e-06 57.0 148 27.0
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.2e-06 55.8 84 40.5


User provided reference genes

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