Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 0.0e+00 1103.6 565 100.0
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.9e-272 942.2 518 94.8
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 6.6e-262 907.1 565 83.9
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 9.9e-234 813.5 589 74.7
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 2.4e-139 500.0 567 52.2
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 2.4e-126 456.8 569 50.3
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 3.1e-94 350.1 586 43.0
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 1.3e-92 344.7 533 42.8
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 7.4e-80 302.4 590 39.8
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.7e-74 283.1 588 37.6
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 2.2e-71 274.2 590 37.5
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 6.3e-71 272.7 587 36.8
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 3.5e-69 266.9 588 35.5
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 9.8e-64 248.8 583 32.6
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.3e-55 219.5 532 34.6
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.3e-55 219.5 504 32.7
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 4.1e-54 216.9 500 36.2
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 4.5e-53 213.4 464 36.4
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.1e-51 208.8 587 32.0
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 4.3e-51 206.8 566 32.7
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 4.3e-51 206.8 426 37.8
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 3.0e-49 200.7 583 34.3
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 5.2e-49 199.9 518 33.0
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 5.2e-49 199.9 425 34.4
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 3.0e-44 184.1 567 31.4
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.1e-43 182.2 464 30.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 2.3e-41 174.5 343 37.3
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 3.1e-41 174.1 425 35.8
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 3.4e-40 170.6 362 37.0
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 7.0e-38 162.9 408 35.3
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 1.7e-36 158.3 569 30.1
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 1.5e-35 155.2 542 31.2
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 1.9e-35 154.8 411 34.5
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 1.1e-33 149.1 649 28.0
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 2.3e-33 147.9 408 33.6
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.1e-29 134.8 418 31.3
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 2.1e-29 134.8 397 33.0
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 2.7e-29 134.4 397 33.2
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 1.3e-28 132.1 394 30.5
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 1.7e-28 131.7 394 32.2
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 1.5e-27 128.6 394 29.4
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 2.5e-27 127.9 425 32.2
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 4.3e-27 127.1 433 30.9
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 4.3e-27 127.1 393 29.8
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 1.6e-26 125.2 397 30.7
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 6.8e-25 119.8 384 32.0
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 8.9e-25 119.4 315 32.1
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 7.6e-24 116.3 519 28.9
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 9.2e-22 109.4 503 28.2
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 3.5e-21 107.5 488 26.8
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 6.0e-21 106.7 503 28.6
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 6.6e-20 103.2 504 28.4
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.1e-19 102.4 430 28.8
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.5e-19 101.3 326 31.0
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 9.6e-19 99.4 433 29.6
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 1.2e-18 99.0 493 26.8
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 3.6e-18 97.4 356 30.3
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 2.0e-16 91.7 434 28.3
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 4.4e-16 90.5 508 27.0
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 1.3e-15 89.0 357 29.7
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.3e-15 89.0 304 31.6
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 1.7e-15 88.6 395 30.4
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 2.2e-15 88.2 357 29.4
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 2.2e-15 88.2 357 29.4
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 2.2e-15 88.2 357 29.4
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 8.4e-15 86.3 502 26.3
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 4.2e-14 84.0 389 28.0
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 1.2e-13 82.4 598 25.8
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 3.5e-13 80.9 380 29.7
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 7.8e-13 79.7 355 28.2
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 1.0e-12 79.3 603 25.0
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 1.7e-12 78.6 390 29.2
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 1.7e-12 78.6 391 27.9
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 8.7e-12 76.3 387 26.6
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 8.7e-12 76.3 418 26.6
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.1e-11 75.9 539 25.2
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 1.5e-11 75.5 194 35.1
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.9e-11 75.1 408 25.7
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 9.6e-11 72.8 401 26.4
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 1.4e-09 68.9 260 26.5
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 3.1e-09 67.8 91 45.1
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 1.5e-08 65.5 461 24.3
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 9.9e-08 62.8 293 25.3
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 9.9e-08 62.8 211 30.8
Nitab4.5_0002598g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 1.3e-07 62.4 100 41.0
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.2e-07 61.6 387 25.1
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 2.9e-07 61.2 640 24.1
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 2.9e-07 61.2 516 24.8
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 2.9e-07 61.2 105 41.0
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 4.9e-07 60.5 160 33.8
Os09g0514700 Oryza sativa ssp. japonica HOM05D028297 ORTHO05D037162 4.2e-06 57.4 358 25.4
Lsat_1_v5_gn_3_115581 Lactuca sativa HOM05D040109 ORTHO05D009358 7.1e-06 56.6 121 31.4


User provided reference genes

Program Settings