Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 0.0e+00 1294.3 656 100.0
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 0.0e+00 1111.3 648 88.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.0e-310 1068.5 618 88.3
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 2.3e-165 586.6 691 50.5
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 1.3e-147 527.7 712 45.8
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.9e-135 487.3 666 44.9
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 3.9e-133 479.6 714 43.8
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 2.4e-130 470.3 655 43.4
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.2e-129 468.0 683 44.2
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 2.9e-128 463.4 666 42.8
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 8.5e-128 461.8 654 42.8
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 3.2e-127 459.9 669 41.7
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.7e-126 456.8 668 43.3
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 8.8e-125 451.8 692 42.3
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.2e-123 447.2 646 42.7
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 5.9e-121 439.1 669 42.6
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 1.1e-119 434.9 665 42.0
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.5e-119 434.5 659 41.0
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.9e-119 434.1 655 41.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 8.0e-118 428.7 678 40.3
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 5.2e-117 426.0 625 43.5
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.2e-117 426.0 654 40.7
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.5e-111 407.1 653 39.5
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 2.1e-110 404.1 653 39.4
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 4.7e-110 402.9 677 39.9
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 6.1e-110 402.5 662 39.3
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 4.0e-109 399.8 680 38.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 5.7e-108 396.0 655 38.2
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 5.7e-108 396.0 688 39.2
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 2.2e-107 394.0 692 38.2
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 3.7e-107 393.3 691 39.5
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 9.2e-106 388.7 707 38.3
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 7.8e-105 385.6 694 38.6
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.0e-104 385.2 673 39.5
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.7e-104 384.4 678 39.8
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 2.9e-104 383.6 671 39.3
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.9e-104 383.3 700 36.7
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 3.9e-104 383.3 684 37.0
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 1.9e-103 380.9 656 38.7
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 4.3e-103 379.8 685 38.0
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 9.5e-103 378.6 691 37.8
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.2e-102 378.3 698 36.1
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.2e-102 378.3 698 36.1
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.8e-101 374.4 711 37.8
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 3.1e-101 373.6 696 36.1
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 4.0e-101 373.2 689 37.0
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.2e-100 371.7 695 37.3
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 7.5e-100 369.0 644 39.8
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 9.8e-100 368.6 607 40.4
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 3.2e-98 363.6 696 38.1
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.7e-97 360.5 659 37.6
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.0e-96 358.6 659 37.2
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.3e-96 358.2 725 37.7
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 2.3e-96 357.5 657 37.1
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 4.3e-95 353.2 701 36.9
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 5.6e-95 352.8 668 36.8
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 7.3e-95 352.4 591 38.7
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.6e-94 351.3 654 37.3
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 2.1e-94 350.9 676 36.2
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 2.3e-93 347.4 668 37.6
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 4.0e-93 346.7 660 36.4
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 1.5e-92 344.7 663 36.7
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.5e-92 344.7 681 35.7
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 7.5e-92 342.4 685 35.8
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 4.9e-91 339.7 650 35.8
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.9e-91 339.7 412 45.6
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 2.4e-90 337.4 640 37.2
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.3e-85 320.9 489 42.1
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 2.6e-84 317.4 712 36.0
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.6e-81 308.1 709 35.3
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.9e-79 301.2 662 34.7
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.2e-78 298.5 607 36.1
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.8e-77 292.7 716 33.8
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 8.9e-77 292.4 679 34.0
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.2e-76 292.0 646 34.8
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 5.8e-76 289.7 660 33.8
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.2e-75 287.7 532 39.1
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 3.8e-75 287.0 679 35.8
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 4.9e-75 286.6 642 33.3
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.4e-75 286.2 532 38.9
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 3.2e-74 283.9 564 36.7
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.3e-72 278.5 593 35.4
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 3.9e-72 276.9 613 34.4
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.1e-71 275.4 635 35.9
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 4.3e-71 273.5 704 31.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.3e-70 271.9 665 33.4
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 1.3e-70 271.9 655 33.0
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.1e-69 268.9 631 32.8
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 2.4e-69 267.7 424 39.2
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.9e-67 260.8 678 32.0
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 5.4e-66 256.5 656 32.8
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 7.1e-66 256.1 434 40.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.0e-64 250.8 558 34.8
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 6.9e-61 239.6 661 29.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 5.4e-58 229.9 645 31.2
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.3e-58 229.2 340 41.5
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.3e-56 224.6 514 33.9
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.0e-56 224.2 652 29.9
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 5.1e-56 223.4 297 45.8
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.5e-55 221.1 425 37.2
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 6.7e-48 196.4 326 38.3
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.1e-39 169.1 295 38.6
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.8e-37 161.8 317 34.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 9.7e-31 139.4 361 33.8
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 3.7e-30 137.5 410 27.6
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.1e-29 134.4 639 25.7
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.2e-28 132.5 538 26.2
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 2.5e-26 124.8 440 27.3
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 3.8e-19 100.9 347 25.4
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 3.8e-19 100.9 458 24.7
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 3.5e-12 77.8 109 45.0
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.7e-11 75.5 148 38.5
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 6.5e-11 73.6 86 43.0
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.1e-10 72.8 129 34.9
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 3.6e-09 67.8 218 26.1
SMO367G0476 Selaginella moellendorffii HOM05D026854 ORTHO05D008189 8.8e-08 63.2 230 28.3
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 9.8e-07 59.7 66 47.0


User provided reference genes

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