Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.7e-185 652.1 395 100.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.2e-108 397.5 447 63.5
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.6e-89 332.8 441 54.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.7e-76 290.0 412 54.6
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 6.6e-75 285.4 431 48.7
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.5e-74 283.5 400 49.0
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.6e-73 280.8 411 49.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.1e-73 280.4 427 45.4
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 6.2e-73 278.9 413 47.9
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.8e-72 277.3 432 50.0
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.3e-72 276.9 417 46.8
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.3e-72 276.9 415 52.5
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.1e-72 276.6 419 50.6
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-71 274.6 406 46.8
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.2e-71 274.6 428 45.6
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 6.4e-70 268.9 400 47.0
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.9e-69 267.3 396 46.5
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.2e-68 264.6 408 46.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.6e-68 264.2 394 46.4
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.7e-68 263.5 202 68.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.5e-68 263.1 396 45.7
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.6e-68 262.7 393 46.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 6.0e-68 262.3 433 44.1
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 6.0e-68 262.3 436 50.5
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.0e-67 261.5 406 52.0
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.3e-67 261.2 447 46.3
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.0e-67 260.0 399 45.1
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.0e-67 260.0 408 45.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 5.1e-67 259.2 393 43.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-66 257.7 212 67.0
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.9e-66 257.3 402 46.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.9e-66 257.3 396 45.2
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.9e-66 257.3 410 43.4
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.3e-66 256.5 422 45.0
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 4.3e-66 256.1 431 44.5
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.3e-66 256.1 403 45.2
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.6e-65 254.2 232 62.5
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.8e-65 253.4 401 44.1
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.6e-65 253.1 399 49.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 8.1e-65 251.9 398 46.0
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.8e-64 250.8 409 50.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 3.1e-64 250.0 214 63.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.2e-64 249.2 395 45.3
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.9e-64 248.4 403 43.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.0e-63 247.3 415 47.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.6e-63 246.9 396 44.9
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 5.8e-63 245.7 400 43.0
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 7.5e-63 245.4 206 65.5
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.7e-62 244.2 396 45.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-61 241.5 404 44.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.4e-61 240.4 229 59.0
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 7.1e-61 238.8 425 43.8
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 9.2e-61 238.4 415 43.6
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 9.2e-61 238.4 418 40.9
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 9.2e-61 238.4 239 56.9
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.5e-60 236.5 406 40.9
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 7.8e-60 235.3 353 45.0
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.0e-59 235.0 409 40.6
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.7e-59 234.2 204 63.2
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.7e-59 234.2 393 43.5
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.3e-59 233.8 397 47.1
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 2.3e-59 233.8 336 44.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.0e-59 233.4 207 60.9
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.0e-59 233.4 437 40.3
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.9e-59 233.0 441 39.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 6.6e-59 232.3 426 43.2
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.5e-58 231.1 196 62.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.3e-58 229.6 399 40.9
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 9.5e-58 228.4 198 60.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.1e-57 227.3 401 40.4
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 3.6e-57 226.5 399 42.4
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 3.6e-57 226.5 400 42.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 8.1e-57 225.3 389 42.7
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 2.4e-56 223.8 385 43.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.1e-56 223.4 208 58.2
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.5e-55 221.1 389 40.9
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.3e-54 218.0 400 41.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.2e-54 217.2 599 36.2
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.4e-53 214.5 206 58.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 5.1e-51 206.1 414 37.9
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 9.6e-50 201.8 156 63.5
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.6e-49 199.9 213 52.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.9e-48 195.7 429 37.3
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.9e-47 191.8 396 39.4
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.7e-46 191.0 394 37.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 6.4e-46 189.1 416 37.7
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 5.4e-45 186.0 396 38.9
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 9.3e-45 185.3 218 53.2
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.6e-44 184.5 334 41.9
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.5e-44 183.3 392 40.8
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.6e-44 183.0 402 38.8
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.0e-43 181.8 130 68.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.9e-43 179.9 380 40.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.9e-42 177.6 201 50.7
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.5e-42 177.2 178 53.9
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.4e-40 171.4 391 37.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.8e-40 171.0 199 48.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 5.3e-40 169.5 516 38.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.2e-38 164.1 277 43.0
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.4e-38 162.5 194 52.6
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-36 157.1 405 35.1
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 6.0e-36 156.0 388 39.7
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.3e-35 154.8 219 42.9
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 6.7e-35 152.5 388 38.9
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 6.7e-35 152.5 388 38.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 5.6e-34 149.4 385 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 9.6e-34 148.7 151 49.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 8.1e-33 145.6 192 50.5
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 3.4e-31 140.2 131 59.5
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.4e-30 136.0 140 57.1
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 2.3e-27 127.5 221 37.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 6.7e-27 125.9 129 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.6e-26 122.9 127 47.2
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.2e-25 119.0 199 44.7
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.0e-23 114.4 331 40.2
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.4e-23 113.6 390 32.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.7e-22 111.3 181 39.8
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 8.4e-22 109.0 77 66.2
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.5e-21 106.3 82 68.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 4.6e-20 103.2 168 39.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.0e-19 100.5 94 54.3
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.7e-19 99.4 139 48.2
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 6.9e-16 89.4 156 39.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 3.4e-15 87.0 290 30.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.0e-14 85.5 63 63.5
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-14 85.1 189 34.9
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.7e-14 84.7 112 41.1
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.5e-14 82.8 116 42.2
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.8e-11 74.7 103 42.7
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.3e-11 74.3 45 73.3
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 3.3e-10 70.5 287 29.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.7e-09 67.0 274 31.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 5.3e-08 63.2 55 58.2
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.5e-07 61.6 269 28.6
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 3.4e-07 60.5 288 33.3
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 4.5e-07 60.1 56 55.4
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.2e-06 57.8 81 40.7
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 3.8e-06 57.0 52 51.9
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 3.8e-06 57.0 55 50.9


User provided reference genes

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