Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 0.0e+00 1105.1 559 100.0
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 8.2e-289 996.5 614 83.7
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.6e-234 815.5 487 83.6
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 8.2e-188 661.0 578 62.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.3e-169 600.5 579 56.6
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 5.7e-165 585.1 564 57.3
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 6.3e-164 581.6 586 53.6
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.1e-163 580.9 563 56.3
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 5.3e-163 578.6 586 54.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 6.7e-158 561.6 607 52.2
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.7e-156 557.0 590 51.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.2e-156 556.6 603 52.2
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.7e-156 555.8 592 51.7
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 8.2e-156 554.7 577 52.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.0e-155 551.6 590 51.9
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.2e-154 550.8 572 51.2
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.6e-154 550.4 599 48.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.5e-154 548.9 602 52.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 4.7e-151 538.9 593 50.8
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 6.1e-151 538.5 598 50.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.4e-150 537.3 659 48.0
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 5.7e-149 531.9 590 50.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.3e-148 528.5 624 50.3
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.4e-147 526.6 564 50.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.2e-146 524.2 566 51.2
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-146 523.5 609 48.6
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.0e-146 523.5 568 51.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.5e-146 522.3 579 50.9
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.2e-145 520.0 564 50.0
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.5e-144 516.5 573 48.7
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.6e-143 512.7 560 49.1
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.7e-143 512.3 571 49.2
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.4e-142 510.8 567 49.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 6.8e-142 508.4 560 49.5
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 5.7e-141 505.4 568 48.4
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.8e-139 500.4 564 48.2
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.8e-139 500.4 558 48.7
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 2.4e-139 500.0 584 48.8
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.4e-139 500.0 587 47.5
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.1e-139 498.0 570 47.0
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 3.5e-138 496.1 568 47.7
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.5e-138 495.7 591 47.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 5.9e-138 495.4 610 47.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.0e-137 494.6 618 46.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 6.6e-137 491.9 605 47.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 8.6e-137 491.5 597 47.1
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.5e-136 490.7 567 46.2
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 5.5e-136 488.8 588 47.1
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.5e-136 488.0 581 47.2
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.2e-135 487.6 630 46.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.2e-135 487.6 569 45.7
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.6e-135 487.3 581 48.4
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 8.0e-135 485.0 570 47.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.0e-135 485.0 572 46.7
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.4e-134 484.2 580 46.4
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.4e-134 484.2 588 48.0
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-134 483.8 580 46.2
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.3e-134 483.4 582 46.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-133 481.1 562 47.2
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.0e-133 480.3 560 46.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-132 476.9 572 46.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.9e-132 475.7 619 45.1
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-131 473.8 566 46.6
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.4e-131 473.4 579 46.6
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.1e-131 472.6 568 46.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.7e-130 469.9 561 49.0
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 5.9e-130 468.8 661 44.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 9.5e-128 461.5 618 44.7
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.1e-127 460.3 471 52.2
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 3.6e-127 459.5 555 46.5
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 4.0e-126 456.1 565 45.3
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 8.9e-126 454.9 567 45.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.2e-125 454.5 475 49.5
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.0e-125 453.8 499 49.1
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.6e-125 453.4 571 45.2
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 7.5e-125 451.8 619 44.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.5e-125 451.8 619 44.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 7.5e-125 451.8 668 42.1
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.4e-123 447.6 594 44.9
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 4.1e-123 446.0 564 44.7
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 7.0e-123 445.3 632 42.4
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-122 444.5 530 47.2
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.9e-120 437.2 565 43.5
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-120 436.8 565 43.9
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 7.3e-120 435.3 499 47.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.6e-119 433.0 605 43.8
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.1e-118 431.4 637 41.1
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.8e-118 430.6 443 52.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.8e-118 430.6 639 41.0
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.4e-117 426.4 668 41.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 4.9e-116 422.5 557 43.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.6e-111 407.5 622 40.7
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.2e-109 401.4 496 46.2
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.0e-109 400.6 429 48.7
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 4.7e-103 379.4 564 42.2
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.4e-102 377.9 583 39.6
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.4e-102 377.9 556 43.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.2e-101 374.8 539 43.4
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 4.4e-101 372.9 502 43.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.7e-100 370.9 572 42.5
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.7e-100 370.9 563 40.5
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.3e-89 334.0 473 44.0
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 9.6e-88 328.6 674 34.6
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.8e-87 326.2 481 42.0
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-86 323.9 377 44.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.3e-84 318.2 341 50.7
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 6.4e-84 315.8 622 36.0
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.9e-83 314.3 501 37.7
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 2.4e-83 313.9 504 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.5e-82 310.1 465 39.4
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.3e-81 308.1 351 49.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.8e-81 307.8 424 39.2
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.9e-81 306.6 363 46.8
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.4e-75 288.1 357 47.1
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.1e-70 270.4 250 54.8
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.4e-67 261.5 263 51.7
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.4e-67 261.5 319 47.3
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 3.4e-61 240.4 340 44.1
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 7.7e-61 239.2 234 54.3
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.1e-59 235.3 293 44.0
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 5.1e-57 226.5 295 46.1
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 3.3e-56 223.8 288 44.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 8.2e-55 219.2 239 50.6
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-53 214.2 264 48.9
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 3.2e-51 207.2 226 47.3
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.2e-50 205.3 269 43.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.5e-48 198.4 218 50.9
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 4.4e-48 196.8 225 48.9
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.4e-48 196.8 244 47.5
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.8e-47 193.4 265 46.8
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 7.7e-45 186.0 132 66.7
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.5e-43 181.0 158 54.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 8.2e-39 166.0 392 37.8
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.3e-38 163.3 315 34.6
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 2.0e-37 161.4 247 45.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 5.9e-37 159.8 171 52.6
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.3e-36 158.7 207 44.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 9.4e-35 152.5 147 51.7
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 4.7e-34 150.2 125 60.8
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.8e-31 141.0 185 44.3
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.3e-31 139.8 185 44.3
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.3e-31 139.8 167 46.7
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.8e-30 138.3 173 48.0
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.4e-30 137.9 189 44.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-30 137.5 185 43.8
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 185 43.2
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 185 43.2
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-29 134.8 185 43.2
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.8e-28 130.6 114 57.0
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.2e-24 119.0 635 21.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 2.8e-23 114.4 104 57.7
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.7e-23 114.0 258 36.4
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.9e-23 113.6 103 54.4
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.3e-23 112.8 233 37.8
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-22 112.1 98 55.1
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-22 110.5 103 53.4
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 5.4e-22 110.2 120 49.2
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 7.7e-21 106.3 189 38.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-19 101.7 85 58.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.7e-16 90.1 77 51.9
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-14 85.1 83 53.0
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.8e-14 85.1 190 38.9
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.9e-12 77.8 69 47.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-11 75.9 86 45.3
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.3e-11 73.9 169 33.7
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 7.3e-11 73.2 45 71.1
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.7e-10 70.5 97 44.3
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 4.7e-10 70.5 275 30.2
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.8e-09 66.6 45 66.7
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 2.0e-08 65.1 99 41.4
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.9e-07 61.2 47 57.4
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 4.9e-07 60.5 112 41.1
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 4.9e-07 60.5 204 32.4
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 5.4e-06 57.0 100 41.0


User provided reference genes

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