Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.5e-119 431.0 222 100.0
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 5.5e-103 377.9 216 90.3
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.0e-101 372.1 222 88.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.1e-82 308.9 201 80.1
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 9.1e-82 307.4 215 76.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 9.1e-82 307.4 225 71.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.9e-80 302.4 221 73.8
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.0e-80 301.6 193 78.2
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.5e-80 301.2 213 75.1
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 8.5e-80 300.8 196 78.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.5e-79 299.3 213 72.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.2e-79 297.7 195 79.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.2e-79 297.7 195 79.0
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.2e-79 297.7 195 79.0
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 9.4e-79 297.4 227 70.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-78 297.0 196 77.0
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-78 296.2 192 78.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.1e-78 296.2 192 78.6
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 3.6e-78 295.4 166 88.0
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 4.7e-78 295.0 177 81.4
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 6.1e-78 294.7 194 77.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 6.1e-78 294.7 192 76.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.8e-77 293.1 210 71.4
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.3e-77 292.7 226 69.9
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.3e-77 292.7 226 69.9
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 3.0e-77 292.4 197 76.1
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 3.0e-77 292.4 170 84.7
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.0e-77 292.0 192 75.5
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 4.0e-77 292.0 224 70.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 4.0e-77 292.0 210 71.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.2e-77 291.6 190 75.3
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.7e-77 291.2 209 73.2
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.8e-77 290.8 190 76.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.5e-76 290.0 193 74.6
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.6e-76 289.3 209 73.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.3e-76 288.9 187 77.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.3e-76 288.9 219 70.3
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 4.4e-76 288.5 210 74.8
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.4e-76 288.5 224 68.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.7e-76 288.1 209 71.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 7.5e-76 287.7 221 70.1
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.3e-75 287.0 193 73.6
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.3e-75 287.0 205 74.1
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.7e-75 286.6 192 75.5
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.7e-75 286.6 192 75.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.2e-75 286.2 193 75.1
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.8e-75 285.8 215 69.3
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.7e-75 285.4 210 69.5
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 3.7e-75 285.4 170 82.9
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 4.8e-75 285.0 219 71.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 6.3e-75 284.6 181 77.9
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 8.2e-75 284.3 174 80.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.4e-74 283.5 211 67.3
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-74 283.5 211 69.7
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.8e-74 283.1 213 71.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.4e-74 282.7 200 74.0
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 2.4e-74 282.7 192 75.5
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.1e-74 282.3 223 64.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.1e-74 282.3 233 65.7
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.1e-74 282.0 207 72.0
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 5.3e-74 281.6 177 80.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 7.0e-74 281.2 215 66.0
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 7.0e-74 281.2 181 76.2
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 9.1e-74 280.8 210 69.0
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 9.1e-74 280.8 207 70.5
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 9.1e-74 280.8 217 68.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.0e-73 279.6 217 68.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.7e-73 279.3 206 69.4
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.7e-73 279.3 217 69.1
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.7e-73 279.3 202 71.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 4.5e-73 278.5 209 66.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 7.7e-73 277.7 162 80.2
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 7.7e-73 277.7 212 68.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.2e-72 276.2 202 71.3
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.5e-72 274.6 221 66.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.9e-71 273.1 184 73.4
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.9e-71 273.1 187 73.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.5e-71 272.7 194 71.6
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.5e-71 272.7 230 64.8
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 7.2e-71 271.2 202 72.8
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.2e-70 270.4 203 69.0
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 2.7e-70 269.2 200 70.5
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 3.6e-70 268.9 222 64.4
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.6e-70 268.9 198 69.2
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 4.7e-70 268.5 158 82.9
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.0e-70 267.7 228 64.0
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 8.0e-70 267.7 204 65.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.0e-69 267.3 199 70.9
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-69 265.8 178 75.8
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 3.0e-69 265.8 190 72.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.0e-69 265.4 158 82.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.2e-68 263.8 231 59.3
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.2e-68 263.8 188 73.9
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.0e-68 263.1 202 65.3
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.6e-68 262.7 204 65.7
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 3.4e-68 262.3 180 73.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 7.5e-68 261.2 217 65.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.3e-67 260.4 213 61.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.7e-67 260.0 139 89.9
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.8e-67 259.2 212 64.6
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.7e-67 258.8 197 67.5
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.7e-67 258.8 214 64.5
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.3e-67 258.1 211 64.5
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.4e-66 256.9 180 73.3
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.8e-66 256.5 216 63.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.8e-66 256.5 216 63.4
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.4e-66 256.1 187 69.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.1e-66 255.4 193 66.8
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 5.4e-66 255.0 212 62.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 7.0e-66 254.6 142 86.6
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-65 253.8 212 61.3
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.6e-65 253.4 179 70.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 7.7e-65 251.1 210 65.7
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 7.7e-65 251.1 146 84.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.1e-63 247.3 229 57.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.5e-63 246.9 177 69.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.5e-63 246.9 194 64.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.1e-62 243.0 210 62.9
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.7e-62 242.7 194 63.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.2e-61 238.4 170 70.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.7e-59 233.4 206 60.2
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.2e-59 233.0 182 63.2
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 6.3e-59 231.5 139 77.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.1e-58 230.7 127 88.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.4e-58 230.3 133 83.5
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.4e-58 230.3 167 67.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 2.4e-58 229.6 189 63.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.0e-57 226.5 139 78.4
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.0e-56 224.2 132 80.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.7e-56 223.4 127 84.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.1e-55 220.7 162 65.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.8e-53 213.4 138 77.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-51 206.8 161 68.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.2e-49 200.7 160 66.9
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-49 200.3 207 52.7
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.0e-49 199.9 145 70.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.6e-49 198.7 179 62.6
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.3e-48 196.4 190 54.2
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.5e-47 193.7 141 63.1
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.8e-45 186.8 146 68.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.0e-45 185.7 145 60.0
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 8.9e-45 184.5 106 85.8
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.2e-43 179.9 97 86.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.0e-41 173.3 97 83.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.9e-39 166.8 160 55.0
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 8.1e-38 161.4 147 61.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.6e-36 156.4 169 48.5
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 5.4e-34 148.7 77 93.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 9.2e-34 147.9 145 51.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.9e-32 142.5 223 45.7
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 3.9e-32 142.5 74 91.9
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.5e-31 139.8 77 85.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.2e-30 135.2 214 45.3
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-29 132.9 108 67.6
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.9e-29 131.3 187 47.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.6e-25 119.0 102 56.9
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-25 118.6 80 72.5
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.5e-23 113.2 129 45.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 4.3e-23 112.5 100 55.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.4e-21 107.5 72 75.0
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 2.4e-18 96.7 70 64.3
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 5.4e-18 95.5 47 93.6
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-14 84.0 130 42.3
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-14 83.2 52 75.0
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.6e-14 82.8 42 90.5
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.8e-14 82.4 42 88.1
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 5.3e-13 79.0 125 43.2
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.7e-09 66.6 37 78.4
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-08 62.8 32 93.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 8.7e-08 61.6 96 35.4
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 7.4e-07 58.5 40 77.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 7.4e-07 58.5 40 77.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 7.4e-07 58.5 69 49.3
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-06 57.4 32 84.4


User provided reference genes

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