Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 0.0e+00 1233.0 626 100.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 0.0e+00 1133.6 622 92.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 0.0e+00 1133.6 626 91.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.9e-294 1015.4 619 83.8
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.0e-284 983.0 620 81.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.1e-284 981.5 620 81.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.9e-284 979.9 623 80.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.2e-283 979.5 620 81.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.2e-282 975.3 608 81.4
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.7e-282 974.5 620 80.6
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.1e-281 973.0 620 81.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.2e-281 971.5 599 82.3
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 7.0e-281 970.3 593 83.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.2e-280 969.5 619 80.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 7.8e-280 966.8 620 80.2
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.7e-279 965.7 620 81.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.1e-278 963.0 618 79.4
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.5e-278 961.8 597 81.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 6.2e-277 957.2 620 80.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 8.9e-276 953.4 621 79.7
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.0e-275 952.2 620 79.5
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.2e-274 948.7 607 80.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-273 946.0 620 79.4
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.2e-273 943.3 600 80.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 9.2e-273 943.3 620 79.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-272 942.2 629 77.7
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.0e-271 939.9 606 79.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.3e-271 939.5 600 80.0
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.3e-271 938.7 595 80.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.3e-271 938.7 618 78.6
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 5.1e-271 937.6 600 79.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.1e-271 937.6 620 78.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.9e-270 935.6 622 77.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-269 932.9 624 77.4
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.1e-269 932.2 620 78.7
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.6e-269 931.4 627 77.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.8e-268 929.1 647 75.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.9e-268 926.8 607 78.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.0e-267 925.6 617 77.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.3e-266 922.9 620 76.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.1e-265 919.8 620 76.5
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-265 919.5 598 79.4
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.4e-265 919.5 626 76.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-265 918.3 600 79.5
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.1e-264 915.6 620 76.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.7e-264 915.2 629 76.5
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 7.8e-264 913.7 626 76.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 3.9e-263 911.4 620 76.0
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.1e-262 909.8 626 76.0
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.9e-262 909.1 608 76.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 5.6e-262 907.5 608 75.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 7.3e-262 907.1 608 76.5
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 4.7e-261 904.4 625 74.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.2e-260 901.0 607 75.5
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-259 899.8 607 76.9
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 4.9e-258 894.4 608 75.3
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.2e-257 891.7 634 73.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.2e-256 889.8 619 74.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-256 889.8 601 76.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.1e-256 889.0 595 78.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 3.5e-256 888.3 623 75.0
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.6e-256 887.9 601 77.2
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.0e-255 886.7 611 75.8
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-255 886.7 623 75.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 8.7e-255 883.6 621 74.9
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 8.7e-255 883.6 618 74.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 7.3e-254 880.6 606 75.4
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 9.6e-254 880.2 602 76.4
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.3e-253 879.8 545 82.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.1e-253 879.0 571 77.6
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.1e-253 877.1 601 76.7
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.1e-252 875.2 612 73.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.4e-251 871.3 597 76.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.3e-250 869.8 604 73.0
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 5.4e-249 864.4 613 74.1
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.1e-248 862.4 607 73.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.7e-248 862.1 594 73.6
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.9e-246 855.9 591 74.6
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.6e-245 851.7 676 67.6
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.2e-242 842.4 550 78.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.9e-242 841.3 611 71.5
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.1e-241 837.4 590 73.4
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 9.3e-241 837.0 619 72.5
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.9e-240 833.9 520 80.8
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 6.7e-239 830.9 626 70.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.7e-239 830.5 609 71.4
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.7e-239 830.5 610 71.1
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.5e-238 829.7 625 70.2
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.3e-238 828.2 599 71.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.8e-237 825.5 608 71.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.8e-237 824.7 610 70.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.3e-236 821.2 569 74.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 9.0e-236 820.5 613 71.0
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.0e-236 820.5 609 69.8
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.4e-235 818.5 609 71.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.3e-234 816.6 596 70.8
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.3e-234 816.6 606 71.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 2.9e-234 815.5 594 71.5
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.8e-234 815.1 627 69.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.9e-234 814.7 594 72.1
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 8.4e-234 813.9 594 71.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.4e-233 813.1 587 71.7
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.2e-233 812.0 622 70.4
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.2e-232 810.1 603 71.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 6.0e-232 807.7 585 72.5
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-231 806.6 594 71.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.3e-231 806.6 594 71.2
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.7e-231 804.3 595 70.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 8.7e-231 803.9 610 70.0
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.8e-228 796.2 621 67.1
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.3e-228 794.7 569 72.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.8e-226 788.5 612 68.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 8.4e-226 787.3 623 69.0
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.2e-225 785.0 559 72.1
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 7.2e-225 784.3 616 67.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.2e-224 783.5 556 72.3
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.2e-224 783.5 610 68.2
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.4e-222 774.2 560 73.6
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.0e-220 767.3 595 69.2
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.0e-218 761.5 595 69.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.6e-216 755.4 595 65.4
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-214 750.4 593 67.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.5e-214 750.0 546 71.8
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.0e-211 739.6 534 71.0
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 6.5e-210 734.6 522 71.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.4e-209 730.7 597 64.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 9.4e-209 730.7 593 68.6
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.7e-207 724.5 618 64.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.4e-206 721.8 519 71.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 5.7e-206 721.5 554 67.5
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.3e-202 710.3 595 62.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.3e-199 699.5 420 83.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.3e-199 699.5 525 68.0
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.0e-198 696.4 613 62.5
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.1e-196 687.6 409 84.4
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.3e-194 683.7 407 83.3
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-194 682.6 560 63.9
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.0e-194 681.8 412 83.7
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.5e-193 678.3 539 65.5
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-192 675.6 535 65.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 7.0e-188 661.4 495 67.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 5.0e-186 655.2 512 66.6
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-184 650.2 604 59.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.4e-182 642.5 528 62.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.4e-182 642.1 464 74.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.6e-160 570.5 584 52.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 9.2e-156 554.7 476 59.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.1e-155 553.5 379 73.9
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.1e-151 541.2 530 57.2
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.2e-147 527.7 358 77.4
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.9e-143 511.9 331 80.1
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-129 468.0 468 56.2
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.5e-105 387.9 341 62.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.9e-69 267.3 157 86.0
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 7.2e-68 262.7 145 90.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.3e-45 188.0 163 59.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.3e-45 188.0 163 58.9
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 4.3e-44 183.7 160 60.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.8e-43 181.0 160 59.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 7.5e-41 172.9 98 86.7
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 5.4e-39 166.8 123 69.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.4e-26 124.8 88 71.6
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-24 117.1 320 28.4
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.9e-23 115.2 88 65.9
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-22 112.5 302 30.5
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.1e-21 107.1 115 53.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-20 105.1 287 27.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 9.6e-20 102.8 60 85.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 5.8e-17 93.6 100 55.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-16 91.7 191 34.6
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 4.9e-16 90.5 84 54.8
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.9e-15 88.6 147 36.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.4e-15 88.2 70 72.9
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-10 70.5 66 60.6
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 3.2e-07 61.2 55 49.1
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.3e-07 59.7 74 48.6


User provided reference genes

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