Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.5e-250 867.5 436 100.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.6e-223 779.2 440 90.0
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.0e-206 723.4 429 84.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 5.0e-201 704.5 425 86.1
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 3.1e-195 685.3 437 78.9
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.7e-193 679.5 441 77.1
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 6.6e-193 677.6 439 77.0
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.1e-192 676.8 439 76.8
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 4.3e-192 674.9 435 76.6
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.1e-191 672.5 441 76.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.6e-191 671.8 439 76.8
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 6.1e-191 671.0 439 75.4
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.6e-189 665.6 441 74.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 3.4e-189 665.2 439 75.9
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.8e-189 664.5 437 76.2
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.9e-187 659.4 439 75.4
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.4e-187 659.1 440 74.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.2e-187 658.7 439 75.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.1e-187 658.3 440 74.5
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 4.1e-187 658.3 430 75.6
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 7.0e-187 657.5 439 73.3
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.0e-187 657.5 440 74.8
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 9.2e-187 657.1 440 74.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.2e-186 656.8 434 76.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.6e-186 656.4 441 74.6
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.0e-186 656.0 434 75.3
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 4.6e-186 654.8 440 76.1
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.7e-185 652.9 441 74.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 2.3e-185 652.5 434 75.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.9e-185 651.7 439 74.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 5.0e-185 651.4 440 74.3
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 8.6e-185 650.6 434 74.0
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 7.3e-184 647.5 441 73.5
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.6e-183 646.4 435 73.3
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.8e-183 645.6 444 71.6
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 8.0e-183 644.0 434 73.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.8e-182 642.9 439 71.1
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.1e-182 642.1 435 72.9
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 4.0e-182 641.7 440 71.6
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 5.8e-181 637.9 441 71.9
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.8e-181 637.9 437 72.8
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 7.5e-181 637.5 434 73.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.3e-180 636.7 433 73.2
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.9e-180 634.8 441 71.9
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 7.8e-178 627.5 437 72.3
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.3e-177 626.7 433 71.6
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.7e-177 626.3 433 71.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.3e-177 625.9 432 72.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 8.6e-177 624.0 437 71.9
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.1e-174 617.1 439 69.7
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.8e-174 616.3 464 68.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.8e-174 616.3 437 70.5
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 3.1e-174 615.5 479 66.0
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 5.2e-174 614.8 431 72.2
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.0e-173 612.8 435 70.3
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 7.5e-173 610.9 434 70.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.7e-172 609.8 448 70.3
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 3.7e-172 608.6 433 70.7
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.9e-172 608.2 433 70.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.4e-171 606.7 431 70.1
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.2e-171 605.5 431 69.4
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 9.2e-171 604.0 431 71.2
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 9.2e-171 604.0 440 68.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.2e-170 603.6 431 69.8
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.1e-170 602.8 431 70.3
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.7e-170 602.4 425 70.6
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.7e-170 602.4 431 70.8
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 7.8e-170 600.9 434 69.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.1e-168 597.0 430 68.1
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 9.5e-168 594.0 528 59.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.1e-167 592.8 437 68.9
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.1e-167 590.9 432 67.4
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 9.9e-165 583.9 473 64.5
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-164 583.6 430 66.7
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.9e-164 581.6 417 70.3
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 4.9e-164 581.6 426 66.9
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 6.4e-164 581.3 469 64.0
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.2e-163 578.6 438 66.9
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 5.4e-163 578.2 438 66.7
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.2e-162 577.0 475 63.2
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 6.0e-162 574.7 417 69.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 7.8e-162 574.3 433 65.6
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.4e-158 562.8 441 65.3
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 4.0e-158 562.0 437 67.0
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.2e-157 560.5 441 65.8
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 4.9e-156 555.1 517 57.1
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.7e-154 549.3 376 73.1
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.7e-153 546.6 447 62.2
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.0e-153 545.8 443 64.6
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 4.5e-149 531.9 422 65.2
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.7e-148 530.0 380 71.1
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.4e-147 526.9 380 69.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.2e-147 525.8 380 69.5
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.9e-145 518.8 363 72.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 8.7e-145 517.7 359 73.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.5e-144 516.9 728 43.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 3.3e-144 515.8 377 69.2
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.1e-142 510.8 457 61.1
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.1e-134 484.2 425 60.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.0e-129 467.6 703 42.2
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.6e-127 460.3 434 54.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 7.9e-122 441.4 335 67.8
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.5e-120 436.4 317 70.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 9.7e-120 434.5 427 50.8
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.8e-119 433.0 301 73.8
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 4.5e-117 425.6 337 64.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 2.2e-116 423.3 442 49.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.1e-110 402.9 286 70.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 6.1e-106 388.7 437 49.2
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 8.5e-100 368.2 350 53.7
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.2e-93 347.8 216 81.0
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.0e-81 306.6 245 65.7
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.4e-78 297.7 220 70.0
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 6.6e-76 288.9 237 66.2
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 5.4e-70 269.2 215 67.4
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 7.0e-70 268.9 283 54.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.3e-67 260.0 161 80.7
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.2e-64 251.5 425 34.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.0e-60 238.4 140 80.0
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.9e-54 217.6 159 66.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.2e-53 214.9 135 77.0
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.9e-52 209.9 440 35.5
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.8e-45 185.7 143 65.0
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 9.0e-41 172.2 141 65.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 5.8e-40 169.5 141 65.2
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.1e-38 165.2 319 35.1
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.3e-36 157.5 196 48.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.6e-36 156.0 189 49.2
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.6e-34 150.2 150 49.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.5e-27 127.5 120 55.0
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.6e-24 117.5 100 57.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.9e-19 101.3 55 78.2
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.3e-15 88.6 77 58.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 1.1e-14 85.5 71 59.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.5e-14 84.3 71 59.2
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.1e-11 75.5 52 73.1
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 7.4e-11 72.8 76 48.7
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 4.8e-10 70.1 43 74.4
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.1e-09 67.4 47 68.1
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.1e-09 67.4 85 41.2
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.2e-07 61.2 39 76.9


User provided reference genes

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