Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.2e-118 429.9 215 100.0
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.6e-107 392.9 215 92.1
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.0e-98 362.1 215 86.0
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.1e-91 339.3 216 81.0
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 7.0e-71 271.2 235 61.7
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.5e-65 253.4 235 59.1
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 1.8e-55 219.9 197 58.4
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.0e-50 204.1 212 53.8
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.0e-50 204.1 212 53.8
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.0e-50 204.1 191 56.5
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 3.4e-49 199.1 200 54.5
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 4.1e-47 192.2 220 50.9
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.2e-47 191.0 218 49.1
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.2e-46 190.7 221 49.8
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.2e-46 190.7 218 49.1
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.3e-45 187.2 220 50.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.3e-45 186.4 197 51.3
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 6.6e-45 184.9 220 51.4
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.1e-44 184.1 236 47.5
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 7.3e-44 181.4 220 49.1
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 8.9e-42 174.5 218 50.5
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.5e-41 173.7 197 50.8
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.7e-40 170.2 218 48.6
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 2.2e-40 169.9 195 52.8
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 9.2e-39 164.5 241 44.8
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.6e-38 163.7 191 50.8
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.6e-38 163.7 194 50.0
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 3.5e-38 162.5 196 50.0
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.6e-38 162.2 228 42.5
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 6.0e-38 161.8 198 50.5
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.9e-37 159.1 197 48.2
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 3.9e-37 159.1 192 48.4
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.3e-36 156.0 193 48.2
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 9.5e-36 154.5 190 47.9
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.1e-35 153.3 236 41.9
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 2.1e-35 153.3 236 41.9
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 8.1e-35 151.4 190 47.9
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 2.3e-34 149.8 142 53.5
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 6.8e-34 148.3 201 47.3
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 2.0e-33 146.7 194 46.4
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 2.6e-33 146.4 191 45.5
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 4.4e-33 145.6 189 45.5
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 4.4e-33 145.6 190 46.3
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.1e-31 141.0 199 43.7
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.9e-31 140.2 195 41.0
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 1.6e-30 137.1 193 46.1
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 3.5e-30 136.0 194 45.9
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 3.5e-30 136.0 205 44.4
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 6.0e-30 135.2 194 43.8
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 6.0e-30 135.2 199 41.7
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.1e-29 132.1 194 44.3
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.1e-29 132.1 215 39.5
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 8.6e-29 131.3 197 44.2
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.9e-28 130.2 199 42.7
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.9e-28 130.2 199 42.7
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 2.5e-28 129.8 238 38.7
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 2.5e-28 129.8 217 41.5
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.5e-28 129.8 178 43.3
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 9.6e-28 127.9 193 38.3
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 4.7e-27 125.6 217 37.3
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.7e-27 125.6 206 38.8
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.5e-25 120.6 218 39.0
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 1.5e-25 120.6 194 43.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.0e-25 120.2 191 41.4
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.6e-25 119.8 229 36.7
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.3e-24 117.5 216 40.3
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 2.9e-24 116.3 283 33.2
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 2.9e-24 116.3 205 40.0
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 2.9e-24 116.3 205 39.5
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.1e-23 114.4 197 41.6
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.1e-23 114.4 206 37.9
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 1.9e-23 113.6 197 40.6
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 3.2e-23 112.8 212 41.5
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 4.2e-23 112.5 217 39.2
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 7.1e-23 111.7 189 42.3
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 9.3e-23 111.3 218 34.9
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.2e-22 110.9 202 41.1
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 1.3e-21 107.5 193 39.4
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.5e-17 94.0 140 40.0
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.0e-17 93.6 197 34.5
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 2.6e-17 93.2 200 37.0
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 4.5e-17 92.4 202 38.6
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.9e-16 89.7 182 35.2
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 3.8e-16 89.4 211 37.9
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.2e-14 84.3 129 40.3
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.6e-14 84.0 124 41.1
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.1e-14 83.6 191 31.4
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 2.7e-14 83.2 174 32.2
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 4.6e-14 82.4 150 37.3
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 7.9e-14 81.6 143 37.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.3e-13 80.9 147 35.4
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.3e-13 80.9 147 38.8
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.8e-13 80.5 156 35.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.8e-13 80.5 143 37.1
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 3.9e-13 79.3 189 34.4
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 6.7e-13 78.6 132 37.9
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 1.5e-12 77.4 141 32.6
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 1.1e-10 71.2 140 34.3
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.8e-10 70.5 125 37.6
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.5e-09 67.4 215 29.8
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 2.6e-09 66.6 118 39.0
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 3.4e-09 66.2 119 40.3
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 5.8e-09 65.5 121 38.0
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 7.6e-09 65.1 118 37.3
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 7.6e-09 65.1 222 27.9
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 2.9e-08 63.2 91 40.7
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 3.8e-08 62.8 116 37.1
TPR.G34860 Trifolium pratense HOM05D007287 ORTHO05D008965 6.4e-08 62.0 114 36.8
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 8.4e-08 61.6 249 29.7
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.1e-07 61.2 183 31.1
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.9e-07 60.5 84 44.0
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 2.4e-07 60.1 213 27.7
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 5.5e-07 58.9 115 37.4
Psat7g166880 Pisum sativum HOM05D007287 ORTHO05D008965 7.1e-07 58.5 46 54.3
Migut.L02048 Erythranthe guttata HOM05D007287 ORTHO05D008965 2.1e-06 57.0 121 37.2
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 2.7e-06 56.6 81 44.4
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 2.7e-06 56.6 81 43.2
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 2.7e-06 56.6 81 44.4
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 2.7e-06 56.6 86 44.2
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 6.0e-06 55.5 143 32.9


User provided reference genes

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