Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.7e-286 988.0 512 100.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 7.8e-254 880.2 637 76.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 6.6e-253 877.1 600 79.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.4e-239 832.8 702 67.1
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 3.9e-229 798.1 601 70.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.1e-226 788.5 607 70.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.4e-223 779.6 597 71.0
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.1e-221 771.2 588 71.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.3e-220 768.5 597 68.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.7e-219 765.0 597 69.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.7e-219 765.0 597 69.7
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-218 762.3 597 69.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.2e-217 760.0 602 67.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.0e-216 756.9 597 67.7
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.4e-215 753.1 601 68.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.4e-213 746.5 598 67.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.3e-213 745.7 600 68.2
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 5.1e-213 744.6 601 68.1
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 5.1e-213 744.6 601 67.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 8.8e-213 743.8 597 68.0
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.1e-212 743.4 597 68.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.5e-212 743.0 593 68.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.3e-212 741.5 597 67.0
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 9.7e-212 740.3 600 67.0
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.3e-211 740.0 593 68.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.7e-211 739.6 588 67.3
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.8e-211 738.8 592 68.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.8e-211 738.8 597 67.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.8e-211 738.0 592 68.1
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.1e-210 736.9 597 67.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 6.9e-210 734.2 593 66.8
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 9.1e-210 733.8 601 65.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.2e-209 733.4 592 68.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 7.7e-209 730.7 601 65.6
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 7.7e-209 730.7 603 66.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.3e-208 729.9 598 67.1
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.8e-208 728.4 597 66.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.0e-208 728.0 602 64.8
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 8.5e-208 727.2 592 66.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-207 726.9 601 65.1
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.2e-207 724.9 593 66.4
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.2e-206 723.4 597 65.3
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.1e-206 722.6 592 64.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.6e-206 721.8 597 66.2
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.1e-206 721.1 597 66.2
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.0e-205 720.3 603 64.7
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.0e-205 718.8 565 68.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.0e-205 718.8 589 65.2
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.7e-203 713.0 591 64.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 4.8e-203 711.4 590 65.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-202 710.3 588 65.8
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-202 710.3 597 64.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.4e-202 709.9 602 63.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 9.1e-202 707.2 588 66.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.0e-201 706.1 602 63.8
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-201 705.7 588 66.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.6e-201 705.7 563 68.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.9e-201 704.5 588 65.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 3.2e-199 698.7 595 64.0
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 5.5e-199 698.0 602 62.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 8.0e-198 694.1 703 57.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 8.8e-197 690.6 589 63.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 4.4e-196 688.3 589 63.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.4e-196 688.3 594 64.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 7.5e-196 687.6 593 61.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.7e-196 687.2 587 63.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 9.7e-196 687.2 596 62.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.7e-195 686.4 589 62.8
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.8e-195 685.6 590 63.6
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.8e-195 685.6 590 63.7
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 4.8e-195 684.9 589 63.2
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 6.3e-195 684.5 566 65.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.4e-194 682.6 589 63.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 4.1e-194 681.8 589 62.8
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.1e-194 681.8 578 64.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.0e-193 679.5 589 63.0
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.0e-193 679.5 590 61.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.7e-193 679.1 591 62.4
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 3.5e-193 678.7 589 62.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.5e-193 678.7 591 62.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.5e-193 678.7 589 63.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 4.5e-193 678.3 589 62.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 7.7e-193 677.6 590 61.9
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 7.7e-193 677.6 597 62.0
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.7e-192 676.4 592 62.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.5e-191 673.3 593 62.6
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.2e-191 671.8 590 62.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 5.5e-191 671.4 601 61.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 7.2e-191 671.0 597 62.1
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 9.4e-191 670.6 576 63.4
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-190 670.2 592 62.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.6e-190 669.8 597 62.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.6e-190 669.8 613 60.2
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 4.7e-190 668.3 576 63.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.7e-190 668.3 576 62.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.7e-190 668.3 592 61.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.1e-190 667.9 601 61.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.0e-190 667.5 597 61.8
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-189 666.8 589 61.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.8e-189 666.4 566 63.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.3e-189 666.0 592 61.7
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.3e-189 666.0 597 61.6
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.2e-189 664.8 591 61.1
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.2e-188 663.7 597 61.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.7e-187 659.8 597 61.1
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.4e-186 656.8 599 61.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.8e-186 656.4 597 59.8
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 3.1e-186 655.6 508 68.5
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-186 654.8 576 62.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.6e-185 653.3 599 59.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 3.5e-185 652.1 591 60.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.8e-181 639.8 602 59.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.2e-180 637.1 594 60.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.1e-175 620.5 511 65.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.1e-170 604.0 572 58.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.3e-168 597.0 590 56.9
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 8.6e-168 594.3 587 56.9
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.8e-164 580.9 566 56.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.3e-159 565.8 610 55.2
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 4.4e-156 555.4 589 54.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.7e-137 493.0 489 55.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.3e-135 485.7 446 60.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 7.3e-135 485.0 433 62.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 4.0e-133 479.2 525 54.9
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-132 476.9 478 55.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.3e-128 463.4 507 54.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.0e-115 421.4 320 70.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.9e-115 419.9 373 63.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 7.9e-113 411.8 517 47.6
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.7e-111 405.6 561 47.6
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.0e-104 384.8 372 56.5
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.1e-98 364.8 243 79.0
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-92 344.7 400 50.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 8.5e-91 338.6 230 74.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.3e-79 300.1 267 56.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.5e-79 298.9 210 72.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.7e-78 297.7 221 63.8
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.9e-76 289.3 243 65.4
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.4e-72 278.1 359 48.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.5e-67 259.2 176 76.7
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.9e-58 231.1 249 50.6
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.4e-55 219.9 253 45.5
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.1e-45 188.7 114 82.5
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.2e-45 187.2 244 45.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.7e-41 173.3 127 66.9
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 5.8e-31 139.8 186 47.8
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 4.9e-30 136.7 111 64.0
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.9e-29 134.8 137 56.9
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 9.2e-29 132.5 109 64.2
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.6e-15 87.8 52 80.8
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.6e-15 87.8 52 80.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.8e-15 86.7 50 80.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 8.4e-14 82.8 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-11 75.9 65 63.1
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 1.2e-07 62.4 57 47.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-07 62.4 45 71.1
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.5e-07 62.0 54 57.4
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 3.4e-07 60.8 100 41.0
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 4.9e-06 57.0 30 80.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 4.9e-06 57.0 30 80.0
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 6.4e-06 56.6 57 52.6
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 8.4e-06 56.2 57 52.6


User provided reference genes

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