Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.8e-103 378.3 202 100.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.5e-70 270.0 202 67.8
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 2.0e-67 259.6 202 66.8
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 4.3e-62 241.9 191 70.2
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.1e-60 237.3 199 57.8
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 2.0e-59 233.0 199 61.3
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.6e-59 232.6 202 58.9
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.4e-59 232.3 202 57.9
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 5.8e-59 231.5 202 56.9
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.7e-58 229.9 199 58.3
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.7e-58 228.8 202 56.9
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 5.4e-57 224.9 199 57.3
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.6e-56 223.4 199 56.3
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.1e-56 223.0 199 56.8
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 3.5e-56 222.2 199 57.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 4.6e-56 221.9 197 56.3
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-55 220.3 202 55.4
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 4.3e-54 215.3 199 54.3
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 7.3e-54 214.5 202 54.5
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.2e-53 213.8 200 55.5
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.6e-53 212.2 202 54.0
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.5e-51 206.8 199 52.3
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 2.6e-51 206.1 199 53.8
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 2.6e-51 206.1 200 53.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 4.4e-51 205.3 194 53.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 7.6e-51 204.5 199 53.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-50 202.6 198 51.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.7e-50 202.2 198 51.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.7e-50 202.2 198 51.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.1e-49 200.7 200 52.5
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.4e-49 200.3 198 50.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.9e-49 199.9 198 52.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.9e-49 199.9 198 51.5
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 2.4e-49 199.5 200 51.5
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.4e-49 199.5 199 52.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 4.1e-49 198.7 199 49.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.1e-49 198.0 194 50.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-48 196.1 198 50.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.7e-48 196.1 198 50.5
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.3e-47 193.7 199 50.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.8e-44 183.3 195 48.2
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.0e-44 182.2 199 49.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.2e-42 176.4 202 44.6
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.9e-42 176.0 200 49.5
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.4e-41 173.7 199 46.7
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.9e-41 173.3 215 44.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.2e-41 172.6 200 45.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 4.2e-41 172.2 200 43.0
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 5.4e-41 171.8 202 42.6
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.2e-40 170.6 202 41.6
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.7e-39 166.8 202 41.1
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.3e-39 166.4 201 41.3
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 2.5e-38 162.9 184 46.2
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 3.3e-38 162.5 199 41.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 3.6e-37 159.1 272 36.0
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.8e-36 156.8 202 39.6
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 9.0e-36 154.5 192 40.6
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 7.6e-35 151.4 202 39.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-33 145.6 203 38.4
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-32 144.1 203 37.9
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-32 144.1 203 37.9
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 6.0e-32 141.7 202 37.1
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.9e-31 139.0 202 35.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.6e-31 138.3 199 40.2
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 8.7e-31 137.9 198 39.9
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 7.3e-30 134.8 191 44.0
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 7.3e-30 134.8 192 39.1
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.6e-29 132.5 199 39.2
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 6.2e-29 131.7 196 36.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 3.1e-28 129.4 200 37.0
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 2.0e-27 126.7 195 40.0
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.6e-27 126.3 182 37.9
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 4.5e-27 125.6 196 36.7
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 7.6e-27 124.8 159 44.0
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.3e-26 124.0 60 96.7
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.9e-26 122.1 91 64.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.4e-25 120.6 107 55.1
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 5.4e-25 118.6 148 43.2
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.6e-24 117.1 107 56.1
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 6.0e-24 115.2 107 53.3
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 1.3e-23 114.0 107 52.3
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 2.3e-23 113.2 107 52.3
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 7.4e-22 108.2 107 51.4
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-21 107.5 107 53.3
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.1e-21 106.7 107 50.5
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.8e-21 106.3 142 45.1
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 2.8e-21 106.3 86 58.1
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.8e-21 105.5 107 53.3
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.2e-21 105.1 107 53.3
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.4e-20 104.0 107 49.5
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.4e-20 104.0 107 50.5
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 5.3e-20 102.1 107 49.5
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.0e-20 101.3 107 50.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 1.5e-19 100.5 86 53.5
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.5e-19 100.5 107 50.5
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.5e-19 100.5 107 50.5
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 2.0e-19 100.1 169 37.9
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.6e-19 99.8 74 70.3
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.6e-19 99.8 113 48.7
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.6e-19 99.8 107 50.5
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.4e-19 99.4 108 49.1
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.7e-18 97.1 107 48.6
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 2.2e-18 96.7 56 78.6
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.8e-18 95.9 127 46.5
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 4.9e-18 95.5 184 34.2
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 8.4e-18 94.7 187 33.7
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 8.4e-18 94.7 107 45.8
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.4e-17 94.0 60 68.3
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.2e-17 92.4 92 46.7
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.7e-16 89.7 141 39.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 3.5e-16 89.4 81 50.6
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 3.5e-16 89.4 81 50.6
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.5e-16 89.4 100 51.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 3.5e-16 89.4 107 43.9
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 43.9
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-15 87.4 100 50.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 3.0e-15 86.3 163 33.1
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.9e-15 85.9 84 48.8
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.7e-15 85.1 103 44.7
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.7e-15 85.1 100 49.0
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.5e-14 84.0 107 42.1
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.9e-14 83.6 56 66.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 5.7e-14 82.0 57 59.6
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 9.6e-14 81.3 68 51.5
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.1e-13 80.1 107 45.8
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 2.8e-13 79.7 57 57.9
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 4.8e-13 79.0 66 57.6
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 6.2e-13 78.6 61 54.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.4e-12 77.4 62 53.2
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.4e-12 76.6 57 63.2
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.1e-12 76.3 56 66.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 4.1e-12 75.9 192 27.1
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.8e-11 72.0 69 55.1
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.3e-10 70.9 97 44.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 2.9e-10 69.7 51 62.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 2.9e-10 69.7 51 62.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 5.0e-10 68.9 150 30.7
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 6.5e-10 68.6 126 32.5
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 3.2e-09 66.2 107 33.6
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 4.2e-09 65.9 108 35.2
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 9.3e-09 64.7 107 33.6
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 4.6e-08 62.4 107 33.6
Ca_07678_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.1e-06 57.8 61 44.3
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 9.7e-06 54.7 63 49.2


User provided reference genes

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