Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.3e-214 748.0 369 100.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.1e-180 636.7 367 86.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 3.2e-156 555.4 367 77.4
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.6e-155 551.6 300 87.3
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.7e-154 549.7 366 76.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.3e-154 549.3 364 75.5
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.0e-154 548.9 322 82.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 3.9e-154 548.5 355 77.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 5.1e-154 548.1 350 77.4
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 6.6e-154 547.7 376 74.7
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 1.5e-153 546.6 367 76.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.3e-153 545.4 339 79.9
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.3e-153 545.0 367 75.7
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.3e-153 544.3 314 82.8
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.3e-152 543.5 375 75.2
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.6e-152 543.1 368 75.0
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.8e-152 542.3 366 75.7
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.6e-152 542.0 364 74.5
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 4.8e-152 541.6 337 79.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 4.8e-152 541.6 372 74.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 8.1e-152 540.8 366 75.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.1e-151 540.4 341 78.0
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-151 540.0 362 75.1
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.9e-151 537.7 360 74.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 9.0e-151 537.3 305 84.3
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.6e-150 535.8 366 74.0
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.6e-150 535.8 369 73.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 7.6e-150 534.3 327 79.2
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 9.9e-150 533.9 353 73.7
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 9.9e-150 533.9 308 83.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.9e-149 532.3 370 73.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 4.9e-149 531.6 363 72.5
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 4.9e-149 531.6 368 72.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-148 530.4 366 73.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.4e-148 530.0 366 73.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.4e-148 530.0 356 73.6
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-148 529.6 365 72.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-148 529.6 362 73.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-148 529.6 364 72.5
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-148 529.6 368 72.0
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 1.9e-148 529.6 362 73.2
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.9e-148 529.6 353 73.7
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-148 529.3 366 71.3
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-148 529.3 366 71.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 2.4e-148 529.3 362 73.5
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.2e-148 528.9 365 72.6
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.2e-148 528.9 362 73.8
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 7.1e-148 527.7 364 73.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-147 526.9 364 73.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.6e-147 526.6 364 73.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.6e-147 526.6 363 72.5
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.1e-147 526.2 356 72.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.1e-147 526.2 329 78.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.1e-147 526.2 361 74.0
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.7e-147 525.8 362 73.8
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.5e-147 525.4 364 72.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.5e-147 525.4 363 72.2
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 4.6e-147 525.0 365 74.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.9e-147 524.2 364 73.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.0e-146 523.9 365 72.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.0e-146 523.9 363 71.9
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.0e-146 523.9 351 75.5
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.3e-146 523.5 351 75.5
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.8e-146 523.1 370 70.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.8e-146 523.1 363 71.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.3e-146 522.7 356 72.5
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.3e-146 522.7 326 77.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.3e-146 522.7 388 69.6
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.1e-146 521.5 326 76.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.5e-145 520.0 313 79.6
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.5e-145 520.0 297 80.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.5e-145 520.0 299 82.9
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.5e-145 520.0 362 72.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.5e-145 520.0 371 71.7
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.5e-145 520.0 327 76.5
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.3e-145 518.8 357 73.9
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.3e-145 518.8 366 70.5
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 4.3e-145 518.5 364 72.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.4e-145 517.7 370 72.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.3e-144 516.9 372 69.4
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.3e-144 516.9 345 72.8
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.6e-144 516.5 364 70.9
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.8e-144 515.8 365 71.2
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 8.1e-144 514.2 326 76.7
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.1e-143 513.8 362 72.1
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.8e-143 513.1 365 68.8
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-143 512.7 364 71.7
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.1e-143 512.3 373 71.8
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.3e-143 511.5 360 70.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 5.3e-143 511.5 342 72.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 6.9e-143 511.1 381 69.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 6.9e-143 511.1 360 70.3
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.0e-142 509.6 335 74.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-141 506.9 366 70.8
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.9e-141 505.0 311 77.5
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 6.4e-141 504.6 382 66.8
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.1e-140 503.8 361 69.5
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.4e-140 503.4 345 71.6
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.9e-140 503.1 368 70.1
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 9.3e-140 500.7 282 85.5
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.6e-139 500.0 305 77.4
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 4.3e-137 491.9 370 69.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.8e-136 489.2 357 68.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 5.3e-135 485.0 323 71.5
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.3e-133 480.3 327 73.4
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.5e-132 474.9 481 53.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.7e-131 472.6 331 72.5
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-130 470.3 334 71.0
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.3e-130 469.5 391 62.7
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.0e-125 451.8 392 63.8
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.5e-124 449.5 264 82.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.3e-121 439.1 322 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 6.3e-120 434.9 315 66.0
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.1e-119 434.1 285 71.6
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-115 419.1 359 62.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 4.7e-115 418.7 290 69.3
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-114 416.8 332 66.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 6.5e-109 398.3 292 65.8
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.5e-108 396.4 245 78.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.3e-106 389.8 288 64.2
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 8.8e-106 387.9 287 67.9
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 4.5e-102 375.6 288 63.2
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.8e-98 363.6 246 68.7
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 2.4e-95 353.2 260 70.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 9.4e-92 341.3 293 56.3
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.6e-91 340.5 263 67.7
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 4.7e-91 339.0 332 58.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 8.6e-85 318.2 288 56.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 4.1e-79 299.3 167 84.4
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.7e-72 276.2 160 83.1
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.2e-64 250.4 223 58.7
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.8e-58 230.7 126 83.3
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.2e-56 223.8 131 80.9
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.7e-51 206.1 330 43.0
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-50 203.0 147 68.7
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.5e-44 183.7 132 68.9
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-44 183.3 147 63.9
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-41 174.9 147 62.6
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.2e-39 166.4 121 61.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.3e-37 161.4 113 65.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-36 156.8 147 56.5
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 8.7e-29 132.1 71 87.3
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 8.7e-21 105.5 57 80.7
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.8e-19 100.5 60 78.3
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 8.2e-19 99.0 120 48.3
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.7e-16 91.3 68 64.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-16 91.3 68 64.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.1e-15 88.6 50 78.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-15 87.4 50 78.0
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 7.1e-15 85.9 43 88.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 7.9e-14 82.4 41 87.8
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.5e-12 78.2 46 76.1
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.4e-09 67.0 37 86.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.4e-07 61.6 55 58.2
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 2.7e-06 57.4 51 56.9


User provided reference genes

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